[ Source: pbsuite ]
Package: pbhoney (15.8.24+dfsg-7)
Links for pbhoney
Trisquel Resources:
Download Source Package pbsuite:
- [pbsuite_15.8.24+dfsg-7.dsc]
- [pbsuite_15.8.24+dfsg.orig.tar.xz]
- [pbsuite_15.8.24+dfsg-7.debian.tar.xz]
Maintainer:
Original Maintainers:
- Debian Med Packaging Team (Mail Archive)
- Olivier Sallou
External Resources:
- Homepage [sourceforge.net]
Similar packages:
genomic structural variation discovery
PBHoney is an implementation of two variant-identification approaches designed to exploit the high mappability of long reads (i.e., greater than 10,000 bp). PBHoney considers both intra-read discordance and soft-clipped tails of long reads to identify structural variants.
PBHoney is part of the PBSuite.
Other Packages Related to pbhoney
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- dep: blasr
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: python3-h5py
- general-purpose Python interface to hdf5
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- dep: python3-intervaltree-bio
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- dep: python3-networkx
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- dep: python3-numpy
- Fast array facility to the Python 3 language
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- dep: python3-pbbanana (= 15.8.24+dfsg-7)
- additional utilities for the pbsuite
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- dep: python3-pbsuite-utils (= 15.8.24+dfsg-7)
- software for Pacific Biosciences sequencing data -- Python utilities
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- dep: python3-pysam
- interface for the SAM/BAM sequence alignment and mapping format (Python 3)
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- dep: samtools
- processing sequence alignments in SAM, BAM and CRAM formats
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- rec: pbdagcon
- sequence consensus using directed acyclic graphs
Download pbhoney
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| all | 1,025.9 kB | 3806 kB | [list of files] |