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Package: phybin (0.3-5build1)

binning/clustering newick trees by topology

PhyBin is a simple command line tool that classifies a set of Newick tree files by their topology. The purpose of it is to take a large set of tree files and browse through the most common tree topologies.

It can do simple binning of identical trees or more complex clustering based on an all-to-all Robinson-Foulds distance matrix.

phybin produces output files that characterize the size and contents of each bin or cluster (including generating GraphViz-based visual representations of the tree topologies).

Other Packages Related to phybin

  • depends
  • recommends
  • suggests
  • dep: libc6 (>= 2.34)
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
  • dep: libffi8 (>= 3.4)
    Foreign Function Interface library runtime
  • dep: libgmp10
    Multiprecision arithmetic library

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Architecture Package Size Installed Size Files
arm64 2,237.0 kB14580 kB [list of files]