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Package: q2-feature-classifier (2021.8.0-1)

QIIME 2 plugin supporting taxonomic classification

QIIME 2 is a powerful, extensible, and decentralized microbiome analysis package with a focus on data and analysis transparency. QIIME 2 enables researchers to start an analysis with raw DNA sequence data and finish with publication-quality figures and statistical results. Key features: 

 * Integrated and automatic tracking of data provenance
 * Semantic type system
 * Plugin system for extending microbiome analysis functionality
 * Support for multiple types of user interfaces (e.g. API, command line,
graphical)

QIIME 2 is a complete redesign and rewrite of the QIIME 1 microbiome analysis pipeline. QIIME 2 will address many of the limitations of QIIME 1, while retaining the features that makes QIIME 1 a powerful and widely-used analysis pipeline.

QIIME 2 currently supports an initial end-to-end microbiome analysis pipeline. New functionality will regularly become available through QIIME 2 plugins. You can view a list of plugins that are currently available on the QIIME 2 plugin availability page. The future plugins page lists plugins that are being developed.

Other Packages Related to q2-feature-classifier

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  • dep: python3
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  • dep: python3-biom-format
    Biological Observation Matrix (BIOM) format (Python 3)
  • dep: python3-joblib
    tools to provide lightweight pipelining in Python
  • dep: python3-skbio
    Python3 data structures, algorithms, educational resources for bioinformatic
  • dep: python3-sklearn
    Python modules for machine learning and data mining - Python 3
  • dep: q2-feature-table (>= 2021.8.0)
    QIIME 2 plugin supporting operations on feature tables
  • dep: q2-quality-control (>= 2021.8.0)
    QIIME 2 plugin for quality assurance of feature and sequence data
  • dep: q2-taxa (>= 2021.8.0)
    QIIME 2 plugin for working with feature taxonomy annotations
  • dep: q2-types (>= 2021.8.0)
    QIIME 2 plugin defining types for microbiome analysis
  • dep: qiime (>= 2021.8.0)
    Quantitative Insights Into Microbial Ecology
  • dep: vsearch
    tool for processing metagenomic sequences

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