[ Source: sga ]
Package: sga (0.10.15-7)
Links for sga
Trisquel Resources:
Download Source Package sga:
Maintainer:
Original Maintainers:
- Debian Med Packaging Team (Mail Archive)
- Michael R. Crusoe
- Andreas Tille
External Resources:
- Homepage [github.com]
Similar packages:
de novo genome assembler that uses string graphs
The major goal of SGA is to be very memory efficient, which is achieved by using a compressed representation of DNA sequence reads.
SGA is a de novo assembler for DNA sequence reads. It is based on Gene Myers' string graph formulation of assembly and uses the FM-index/Burrows-Wheeler transform to efficiently find overlaps between sequence reads.
Other Packages Related to sga
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- dep: libbamtools2.5.1 (>= 2.5.1+dfsg)
- dynamic library for manipulating BAM (genome alignment) files
-
- dep: libc6 (>= 2.34)
- GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
-
- dep: libgcc-s1 (>= 3.3.1)
- GCC support library
-
- dep: libstdc++6 (>= 5.2)
- GNU Standard C++ Library v3
-
- dep: perl
- Larry Wall's Practical Extraction and Report Language
-
- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: python3-pysam
- interface for the SAM/BAM sequence alignment and mapping format (Python 3)
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- dep: python3-ruffus
- Python3 computation pipeline library widely used in bioinformatics
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- dep: samtools
- processing sequence alignments in SAM, BAM and CRAM formats
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- dep: zlib1g (>= 1:1.1.4)
- compression library - runtime
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- rec: abyss
- Package not available
Download sga
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| arm64 | 72.4 kB | 234 kB | [list of files] |