[ Source: r-bioc-annotationhub ]
Package: r-bioc-annotationhub (3.2.1+dfsg-1)
Links for r-bioc-annotationhub
Trisquel Resources:
Download Source Package r-bioc-annotationhub:
- [r-bioc-annotationhub_3.2.1+dfsg-1.dsc]
- [r-bioc-annotationhub_3.2.1+dfsg.orig.tar.xz]
- [r-bioc-annotationhub_3.2.1+dfsg-1.debian.tar.xz]
Maintainer:
Original Maintainers:
- Debian R Packages Maintainers
- Andreas Tille
External Resources:
- Homepage [bioconductor.org]
Similar packages:
GNU R client to access AnnotationHub resources
This package provides a client for the Bioconductor AnnotationHub web resource. The AnnotationHub web resource provides a central location where genomic files (e.g., VCF, bed, wig) and other resources from standard locations (e.g., UCSC, Ensembl) can be discovered. The resource includes metadata about each resource, e.g., a textual description, tags, and date of modification. The client creates and manages a local cache of files retrieved by the user, helping with quick and reproducible access.
Other Packages Related to r-bioc-annotationhub
|
|
|
-
- dep: r-api-4.0
- virtual package provided by r-base-core
-
- dep: r-api-bioc-3.14
- virtual package provided by r-bioc-biocgenerics
-
- dep: r-base-core (>= 4.1.2-1ubuntu1)
- GNU R core of statistical computation and graphics system
-
- dep: r-bioc-annotationdbi (>= 1.31.19)
- GNU R Annotation Database Interface for BioConductor
-
- dep: r-bioc-biocfilecache (>= 1.5.1)
- GNU R management of files across sessions
-
- dep: r-bioc-biocgenerics (>= 0.15.10)
- generic functions for Bioconductor
-
- dep: r-bioc-biocversion
- set the appropriate version of Bioconductor packages
-
- dep: r-bioc-interactivedisplaybase
- base package for enabling powerful shiny web displays of Bioconductor objects
-
- dep: r-bioc-s4vectors
- BioConductor S4 implementation of vectors and lists
-
- dep: r-cran-biocmanager
- access the Bioconductor project package repository
-
- dep: r-cran-curl
- GNU R modern and flexible web client for R
-
- dep: r-cran-dplyr
- GNU R grammar of data manipulation
-
- dep: r-cran-httr
- GNU R tools for working with URLs and HTTP
-
- dep: r-cran-rappdirs
- GNU R application directories
-
- dep: r-cran-rsqlite
- Database Interface R driver for SQLite
-
- dep: r-cran-yaml
- Methods to convert R data to YAML and back
-
- sug: r-bioc-biocstyle
- standard styles for vignettes and other Bioconductor documents
-
- sug: r-bioc-biostrings
- GNU R string objects representing biological sequences
-
- sug: r-bioc-experimenthub
- BioConductor client to access ExperimentHub resources
-
- sug: r-bioc-genomeinfodb
- BioConductor utilities for manipulating chromosome identifiers
-
- sug: r-bioc-genomicfeatures
- GNU R tools for making and manipulating transcript centric annotations
-
- sug: r-bioc-genomicranges
- BioConductor representation and manipulation of genomic intervals
-
- sug: r-bioc-iranges
- GNU R low-level containers for storing sets of integer ranges
-
- sug: r-bioc-rsamtools
- GNU R binary alignment (BAM), variant call (BCF), or tabix file import
-
- sug: r-bioc-rtracklayer
- GNU R interface to genome browsers and their annotation tracks
-
- sug: r-bioc-summarizedexperiment
- BioConductor assay container
-
- sug: r-bioc-variantannotation
- BioConductor annotation of genetic variants
-
- sug: r-cran-knitr
- GNU R package for dynamic report generation using Literate Programming
-
- sug: r-cran-rmarkdown
- convert R markdown documents into a variety of formats
-
- sug: r-cran-runit
- GNU R package providing unit testing framework
Download r-bioc-annotationhub
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| all | 421.5 kB | 699 kB | [list of files] |