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[ Source: presto  ]

Package: python3-presto (0.7.2-1)

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python3-presto

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toolkit for processing B and T cell sequences (Python3 module)

pRESTO is a toolkit for processing raw reads from high-throughput sequencing of B cell and T cell repertoires.

Dramatic improvements in high-throughput sequencing technologies now enable large-scale characterization of lymphocyte repertoires, defined as the collection of trans-membrane antigen-receptor proteins located on the surface of B cells and T cells. The REpertoire Sequencing TOolkit (pRESTO) is composed of a suite of utilities to handle all stages of sequence processing prior to germline segment assignment. pRESTO is designed to handle either single reads or paired-end reads. It includes features for quality control, primer masking, annotation of reads with sequence embedded barcodes, generation of unique molecular identifier (UMI) consensus sequences, assembly of paired-end reads and identification of duplicate sequences. Numerous options for sequence sorting, sampling and conversion operations are also included.

This package provides the presto Python3 module.

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Architecture Package Size Installed Size Files
amd64 78.8 kB513 kB [list of files]
arm64 78.8 kB513 kB [list of files]
armhf 78.8 kB513 kB [list of files]
ppc64el 78.8 kB513 kB [list of files]
riscv64 45.3 kB219 kB [list of files]