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Package: r-bioc-phyloseq (1.22.3-1)

GNU R handling and analysis of high-throughput microbiome census data

The Bioconductor module phyloseq provides a set of classes and tools to facilitate the import, storage, analysis, and graphical display of microbiome census data.

Other Packages Related to r-bioc-phyloseq

  • depends
  • recommends
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  • dep: r-api-3.4
    virtual package provided by r-base-core
  • dep: r-base-core (>= 3.4.2-1ubuntu4)
    GNU R core of statistical computation and graphics system
  • dep: r-bioc-biobase (>= 2.36.2)
    base functions for Bioconductor
  • dep: r-bioc-biocgenerics (>= 0.22.0)
    generic functions for Bioconductor
  • dep: r-bioc-biomformat (>= 1.0.0)
    GNU R interface package for the BIOM file format
  • dep: r-bioc-biostrings (>= 2.40.0)
    GNU R string objects representing biological sequences
  • dep: r-bioc-multtest (>= 2.28.0)
    Bioconductor resampling-based multiple hypothesis testing
  • dep: r-cran-ade4 (>= 1.7-4)
    GNU R analysis of ecological data
  • dep: r-cran-ape (>= 5.0)
    GNU R package for Analyses of Phylogenetics and Evolution
  • dep: r-cran-cluster (>= 2.0.4)
    GNU R package for cluster analysis by Rousseeuw et al
  • dep: r-cran-data.table (>= 1.10.4)
    GNU R extension of Data.frame
  • dep: r-cran-foreach (>= 1.4.3)
    GNU R foreach looping support
  • dep: r-cran-ggplot2 (>= 2.1.0)
    implementation of the Grammar of Graphics
  • dep: r-cran-igraph (>= 1.0.1)
    GNU R network analysis and visualization
  • dep: r-cran-plyr (>= 1.8.3)
    tools for splitting, applying and combining data
  • dep: r-cran-reshape2 (>= 1.4.1)
    Flexibly reshape data: a reboot of the reshape package
  • dep: r-cran-scales (>= 0.4.0)
    Scale functions for visualization
  • dep: r-cran-vegan (>= 2.4)
    Community Ecology Package for R
  • sug: r-bioc-deseq2 (>= 1.16.1)
    R package for RNA-Seq Differential Expression Analysis
  • sug: r-bioc-genefilter (>= 1.58)
    methods for filtering genes from microarray experiments
  • sug: r-bioc-metagenomeseq (>= 1.14)
    GNU R statistical analysis for sparse high-throughput sequencing
  • sug: r-cran-knitr (>= 1.16)
    GNU R package for dynamic report generation using Literate Programming
  • sug: r-cran-testthat (>= 1.0.2)
    GNU R testsuite

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