Skip to content
Sections
>> Trisquel >> Packages >> etiona >> science >> cd-hit
etiona  ] [  nabia  ] [  aramo  ]
[ Source: cd-hit  ]

Package: cd-hit (4.6.8-1)

suite of programs designed to quickly group sequences

cd-hit contains a number of programs designed to quickly group sequences. cd-hit groups proteins into clusters that meet a user-defined similarity threshold. cd-hit-est is similar to cd-hit, but designed to group nucleotide sequences (without introns). cd-hit-est-2d is similar to cd-hit-2d but designed to compare two nucleotide datasets. A number of other related programs are also in this package. Please see the cd-hit user manual, also part of this package, for further information.

Other Packages Related to cd-hit

  • depends
  • recommends
  • suggests
  • dep: libc6 (>= 2.14) [amd64]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
    dep: libc6 (>= 2.7) [i386]
  • dep: libgcc1 (>= 1:3.0) [amd64]
    GCC support library
    dep: libgcc1 (>= 1:4.2) [i386]
  • dep: libgomp1 (>= 4.9)
    GCC OpenMP (GOMP) support library
  • dep: libstdc++6 (>= 5.2)
    GNU Standard C++ Library v3
  • dep: perl
    Larry Wall's Practical Extraction and Report Language

Download cd-hit

Download for all available architectures
Architecture Package Size Installed Size Files
amd64 504.2 kB1376 kB [list of files]
i386 507.1 kB1412 kB [list of files]