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[ Source: circlator  ]

Links for circlator

Trisquel Resources:

• Install using apturl
• Entry at directory.fsf.org
• Bug Reports
• Changelog
• Copyright File

Download Source Package circlator:

• [circlator_1.5.5-1.dsc]
• [circlator_1.5.5.orig.tar.gz]
• [circlator_1.5.5-1.debian.tar.xz]

Maintainer:

• Debian Med Packaging Team (Mail Archive)

Original Maintainers:

• Debian Med Packaging Team (Mail Archive)
• Afif Elghraoui

External Resources:

• Homepage [sanger-pathogens.github.io]

Similar packages:

• unicycler
• plasmidseeker
• unicycler-data
• busco
• metaphlan2
• plasmidid
• metaphlan2-data
• soapdenovo2
• parsnp
• soapdenovo
• shasta

Other Packages Related to circlator

depends

recommends

suggests

• dep: bwa (>= 0.7.12)

  Burrows-Wheeler Aligner

• dep: fastaq (>= 3.12.1)

  FASTA and FASTQ file manipulation tools

• dep: mummer

  Efficient sequence alignment of full genomes

• dep: prodigal

  Microbial (bacterial and archaeal) gene finding program

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-openpyxl

  Python 3 module to read/write OpenXML xlsx/xlsm files

• dep: python3-pymummer (>= 0.9.0)

  Python 3 interface to MUMmer

• dep: python3-pysam (>= 0.8.1)

  interface for the SAM/BAM sequence alignment and mapping format (Python 3)

• dep: samtools

  processing sequence alignments in SAM and BAM formats

• dep: spades

  genome assembler for single-cell and isolates data sets

• sug: canu

  single molecule sequence assembler for genomes

Download circlator

Download for all available architectures

Architecture	Package Size	Installed Size	Files
all	4,225.1 kB	10301 kB	[list of files]