[ Source: miniasm ]
Package: miniasm (0.2+dfsg-2)
Links for miniasm
Trisquel Resources:
Download Source Package miniasm:
Maintainer:
Original Maintainers:
- Debian Med Packaging Team (Mail Archive)
- Sascha Steinbiss
External Resources:
- Homepage [github.com]
Similar packages:
ultrafast de novo assembler for long noisy DNA sequencing reads
Miniasm is an experimental very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-mappings (typically by minimap) as input and outputs an assembly graph in the GFA format. Different from mainstream assemblers, miniasm does not have a consensus step. It simply concatenates pieces of read sequences to generate the final unitig sequences. Thus the per-base error rate is similar to the raw input reads.
Other Packages Related to miniasm
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- dep: libc6 (>= 2.14) [amd64]
- GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
- dep: libc6 (>= 2.4) [i386]
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- dep: zlib1g (>= 1:1.1.4)
- compression library - runtime
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- rec: minimap
- tool for approximate mapping of long biosequences such as DNA reads
Download miniasm
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| amd64 | 28.6 kB | 70 kB | [list of files] |
| i386 | 29.5 kB | 70 kB | [list of files] |