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[ Source: sga  ]

Package: sga (0.10.15-3)

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sga

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Download Source Package sga:

Maintainer:

Original Maintainers:

  • Debian Med Packaging Team (Mail Archive)
  • Michael R. Crusoe
  • Andreas Tille

External Resources:

Similar packages:

de novo genome assembler that uses string graphs

The major goal of SGA is to be very memory efficient, which is achieved by using a compressed representation of DNA sequence reads.

SGA is a de novo assembler for DNA sequence reads. It is based on Gene Myers' string graph formulation of assembly and uses the FM-index/Burrows-Wheeler transform to efficiently find overlaps between sequence reads.

Other Packages Related to sga

  • depends
  • recommends
  • suggests
  • dep: libbamtools2.4.0
    dynamic library for manipulating BAM (genome alignment) files
  • dep: libc6 (>= 2.23)
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
  • dep: libgcc1 (>= 1:3.0)
    GCC support library
  • dep: libgomp1 (>= 4.9)
    GCC OpenMP (GOMP) support library
  • dep: libstdc++6 (>= 5.2)
    GNU Standard C++ Library v3
  • dep: python
    interactive high-level object-oriented language (default version)
  • dep: python-pysam
    interface for the SAM/BAM sequence alignment and mapping format (Python 2)
  • dep: python-ruffus
    Python computation pipeline library widely used in bioinformatics
  • dep: samtools
    processing sequence alignments in SAM and BAM formats
  • dep: zlib1g (>= 1:1.1.4)
    compression library - runtime
  • rec: abyss (>= 2.0.2-1)
    Package not available

Download sga

Download for all available architectures
Architecture Package Size Installed Size Files
amd64 974.8 kB2931 kB [list of files]