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[ Source: smrtanalysis ]
Package: smrtanalysis (0~20161126)
Links for smrtanalysis
Trisquel Resources:
Download Source Package smrtanalysis:
Maintainer:
Original Maintainers:
- Debian Med Packaging Team (Mail Archive)
- Afif Elghraoui
External Resources:
- Homepage [www.pacb.com]
Similar packages:
software suite for single molecule, real-time sequencing
SMRT® Analysis is a powerful, open-source bioinformatics software suite available for analysis of DNA sequencing data from Pacific Biosciences’ SMRT technology. Users can choose from a variety of analysis protocols that utilize PacBio® and third-party tools. Analysis protocols include de novo genome assembly, cDNA mapping, DNA base-modification detection, and long-amplicon analysis to determine phased consensus sequences.
This is a metapackage that depends on the components of SMRT Analysis.
Other Packages Related to smrtanalysis
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- dep: blasr
- mapping single-molecule sequencing reads
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- dep: falcon
- diploid-aware genome assembly of single-molecule sequencing reads
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- dep: kineticstools
- detection of DNA modifications
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- dep: pbalign
- map Pacific Biosciences reads to reference DNA sequences
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- dep: pbbamtools
- processing Pacific Biosciences binary alignment/map files
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- dep: pbbarcode
- annotate PacBio sequencing reads with barcode information
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- dep: pbdagcon
- sequence consensus using directed acyclic graphs
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- dep: pbgenomicconsensus
- Pacific Biosciences variant and consensus caller
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- dep: pbh5tools
- tools for manipulating Pacific Biosciences HDF5 files
Download smrtanalysis
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| all | 2.5 kB | 9 kB | [list of files] |