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Package: swarm (2.2.2+dfsg-1)

robust and fast clustering method for amplicon-based studies

The purpose of swarm is to provide a novel clustering algorithm to handle large sets of amplicons. Traditional clustering algorithms results are strongly input-order dependent, and rely on an arbitrary global clustering threshold. swarm results are resilient to input-order changes and rely on a small local linking threshold d, the maximum number of differences between two amplicons. swarm forms stable high-resolution clusters, with a high yield of biological information.

Other Packages Related to swarm

  • depends
  • recommends
  • suggests
  • dep: libc6 (>= 2.14)
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
  • dep: libgcc1 (>= 1:3.0)
    GCC support library
  • dep: libstdc++6 (>= 4.1.1)
    GNU Standard C++ Library v3
  • rec: python
    interactive high-level object-oriented language (default version)

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Architecture Package Size Installed Size Files
amd64 75.9 kB207 kB [list of files]