[ Source: bioperl-run ]
Package: bioperl-run (1.7.3-3)
Links for bioperl-run
Trisquel Resources:
Download Source Package bioperl-run:
Maintainer:
Original Maintainers:
- Debian Med Packaging Team (Mail Archive)
- Charles Plessy
- Andreas Tille
External Resources:
- Homepage [metacpan.org]
Similar packages:
BioPerl wrappers: scripts
Contains scripts from the BioPerl-Run package. This package will also install all wrappable applications packaged in Debian. The ones that are not Free are "Suggested" by this package.
Other Packages Related to bioperl-run
|
|
|
-
- dep: bioperl (>= 1.7.4)
- Perl tools for computational molecular biology
-
- dep: libbio-featureio-perl
- Modules for reading, writing, and manipulating sequence features
-
- dep: libbio-perl-run-perl (= 1.7.3-3)
- BioPerl wrappers: modules
-
- dep: libbio-tools-run-alignment-clustalw-perl
- Bioperl interface to Clustal W
-
- dep: perl
- Larry Wall's Practical Extraction and Report Language
-
- rec: amap-align
- Protein multiple alignment by sequence annealing
-
- rec: bedtools
- suite of utilities for comparing genomic features
-
- rec: bowtie
- Ultrafast memory-efficient short read aligner
-
- rec: bwa
- Burrows-Wheeler Aligner
-
- rec: clustalw
- global multiple nucleotide or peptide sequence alignment
-
- rec: emboss
- European molecular biology open software suite
-
- rec: exonerate
- generic tool for pairwise sequence comparison
-
- rec: hmmer
- profile hidden Markov models for protein sequence analysis
-
- rec: hyphy-mpi
- Hypothesis testing using Phylogenies (MPI version)
-
- rec: infernal
- inference of RNA secondary structural alignments
-
- rec: kalign
- Global and progressive multiple sequence alignment
-
- rec: mafft
- Multiple alignment program for amino acid or nucleotide sequences
-
- rec: maq
- maps short fixed-length polymorphic DNA sequence reads to reference sequences
-
- rec: muscle
- Multiple alignment program of protein sequences
-
- rec: ncbi-blast+-legacy
- NCBI Blast legacy call script
-
- rec: ncoils
- coiled coil secondary structure prediction
-
- rec: phylip
- package of programs for inferring phylogenies
-
- rec: phyml
- Phylogenetic estimation using Maximum Likelihood
-
- rec: primer3
- tool to design flanking oligo nucleotides for DNA amplification
-
- rec: probalign
- multiple sequence alignment using partition function posterior probabilities
-
- rec: probcons
- PROBabilistic CONSistency-based multiple sequence alignment
-
- rec: raxml
- Randomized Axelerated Maximum Likelihood of phylogenetic trees
-
- rec: samtools
- processing sequence alignments in SAM, BAM and CRAM formats
-
- rec: sim4
- tool for aligning cDNA and genomic DNA
-
- rec: t-coffee
- Multiple Sequence Alignment
-
- rec: tigr-glimmer
- Gene detection in archea and bacteria
-
- rec: wise
- comparison of biopolymers, like DNA and protein sequences
-
- sug: gmap
- spliced and SNP-tolerant alignment for mRNA and short reads
Download bioperl-run
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| all | 34.4 kB | 90 kB | [list of files] |