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Package: r-bioc-cner (1.22.0+dfsg-1)

CNE Detection and Visualization

Large-scale identification and advanced visualization of sets of conserved noncoding elements.

Other Packages Related to r-bioc-cner

  • depends
  • recommends
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  • dep: libc6 (>= 2.28)
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
  • dep: r-api-3.5
    virtual package provided by r-base-core
  • dep: r-api-bioc-3.10
    virtual package provided by r-bioc-biocgenerics
  • dep: r-base-core (>= 3.6.1-7)
    GNU R core of statistical computation and graphics system
  • dep: r-bioc-annotate (>= 1.50.0)
    BioConductor annotation for microarrays
  • dep: r-bioc-biocgenerics
    generic functions for Bioconductor
  • dep: r-bioc-biostrings (>= 2.33.4)
    GNU R string objects representing biological sequences
  • dep: r-bioc-genomeinfodb (>= 1.1.3)
    BioConductor utilities for manipulating chromosome identifiers
  • dep: r-bioc-genomicalignments (>= 1.1.9)
    BioConductor representation and manipulation of short genomic alignments
  • dep: r-bioc-genomicranges (>= 1.23.16)
    BioConductor representation and manipulation of genomic intervals
  • dep: r-bioc-go.db (>= 3.3.0)
    annotation maps describing the entire Gene Ontology
  • dep: r-bioc-iranges (>= 2.5.27)
    GNU R low-level containers for storing sets of integer ranges
  • dep: r-bioc-keggrest (>= 1.14.0)
    GNU R client-side REST access to KEGG
  • dep: r-bioc-rtracklayer (>= 1.25.5)
    GNU R interface to genome browsers and their annotation tracks
  • dep: r-bioc-s4vectors (>= 0.13.13)
    BioConductor S4 implementation of vectors and lists
  • dep: r-bioc-xvector (>= 0.5.4)
    BioConductor representation and manpulation of external sequences
  • dep: r-cran-dbi (>= 0.7)
    GNU R package providing a generic database interface
  • dep: r-cran-ggplot2 (>= 2.1.0)
    implementation of the Grammar of Graphics
  • dep: r-cran-powerlaw (>= 0.60.3)
    GNU R analysis of heavy tailed distributions
  • dep: r-cran-r.utils (>= 2.3.0)
    GNU R various programming utilities
  • dep: r-cran-readr (>= 0.2.2)
    GNU R package to read rectangular text data
  • dep: r-cran-reshape2 (>= 1.4.1)
    Flexibly reshape data: a reboot of the reshape package
  • dep: r-cran-rsqlite (>= 0.11.4)
    Database Interface R driver for SQLite
  • sug: r-bioc-gviz (>= 1.7.4)
    Plotting data and annotation information along genomic coordinates
  • sug: r-cran-knitr
    GNU R package for dynamic report generation using Literate Programming
  • sug: r-cran-rmarkdown
    convert R markdown documents into a variety of formats
  • sug: r-cran-testthat
    GNU R testsuite

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Architecture Package Size Installed Size Files
amd64 8,094.2 kB17852 kB [list of files]
armhf 8,076.1 kB17732 kB [list of files]