aramo の all アーキテクチャ用 roary パッケージのファイル一覧

/usr/bin/create_pan_genome
/usr/bin/create_pan_genome_plots
/usr/bin/extract_proteome_from_gff
/usr/bin/iterative_cdhit
/usr/bin/pan_genome_assembly_statistics
/usr/bin/pan_genome_core_alignment
/usr/bin/pan_genome_post_analysis
/usr/bin/pan_genome_reorder_spreadsheet
/usr/bin/parallel_all_against_all_blastp
/usr/bin/protein_alignment_from_nucleotides
/usr/bin/query_pan_genome
/usr/bin/roary
/usr/bin/roary-create_pan_genome_plots.R
/usr/bin/roary-pan_genome_reorder_spreadsheet
/usr/bin/roary-query_pan_genome
/usr/bin/roary-unique_genes_per_sample
/usr/bin/transfer_annotation_to_groups
/usr/share/doc/roary/changelog.Debian.gz
/usr/share/doc/roary/copyright
/usr/share/lintian/overrides/roary
/usr/share/man/man1/create_pan_genome.1p.gz
/usr/share/man/man1/create_pan_genome_plots.1p.gz
/usr/share/man/man1/extract_proteome_from_gff.1p.gz
/usr/share/man/man1/iterative_cdhit.1p.gz
/usr/share/man/man1/pan_genome_assembly_statistics.1p.gz
/usr/share/man/man1/pan_genome_core_alignment.1p.gz
/usr/share/man/man1/pan_genome_post_analysis.1p.gz
/usr/share/man/man1/pan_genome_reorder_spreadsheet.1p.gz
/usr/share/man/man1/parallel_all_against_all_blastp.1p.gz
/usr/share/man/man1/protein_alignment_from_nucleotides.1p.gz
/usr/share/man/man1/query_pan_genome.1p.gz
/usr/share/man/man1/roary-pan_genome_reorder_spreadsheet.1p.gz
/usr/share/man/man1/roary-query_pan_genome.1p.gz
/usr/share/man/man1/roary-unique_genes_per_sample.1p.gz
/usr/share/man/man1/roary.1p.gz
/usr/share/man/man1/transfer_annotation_to_groups.1p.gz
/usr/share/man/man3/Bio::Roary.3pm.gz
/usr/share/man/man3/Bio::Roary::AccessoryBinaryFasta.3pm.gz
/usr/share/man/man3/Bio::Roary::AccessoryClustering.3pm.gz
/usr/share/man/man3/Bio::Roary::AnalyseGroups.3pm.gz
/usr/share/man/man3/Bio::Roary::AnnotateGroups.3pm.gz
/usr/share/man/man3/Bio::Roary::AssemblyStatistics.3pm.gz
/usr/share/man/man3/Bio::Roary::BedFromGFFRole.3pm.gz
/usr/share/man/man3/Bio::Roary::ChunkFastaFile.3pm.gz
/usr/share/man/man3/Bio::Roary::ClustersRole.3pm.gz
/usr/share/man/man3/Bio::Roary::CombinedProteome.3pm.gz
/usr/share/man/man3/Bio::Roary::CommandLine::AssemblyStatistics.3pm.gz
/usr/share/man/man3/Bio::Roary::CommandLine::Common.3pm.gz
/usr/share/man/man3/Bio::Roary::CommandLine::CreatePanGenome.3pm.gz
/usr/share/man/man3/Bio::Roary::CommandLine::ExtractProteomeFromGff.3pm.gz
/usr/share/man/man3/Bio::Roary::CommandLine::GeneAlignmentFromNucleotides.3pm.gz
/usr/share/man/man3/Bio::Roary::CommandLine::IterativeCdhit.3pm.gz
/usr/share/man/man3/Bio::Roary::CommandLine::ParallelAllAgainstAllBlastp.3pm.gz
/usr/share/man/man3/Bio::Roary::CommandLine::QueryRoary.3pm.gz
/usr/share/man/man3/Bio::Roary::CommandLine::Roary.3pm.gz
/usr/share/man/man3/Bio::Roary::CommandLine::RoaryCoreAlignment.3pm.gz
/usr/share/man/man3/Bio::Roary::CommandLine::RoaryPostAnalysis.3pm.gz
/usr/share/man/man3/Bio::Roary::CommandLine::RoaryReorderSpreadsheet.3pm.gz
/usr/share/man/man3/Bio::Roary::CommandLine::TransferAnnotationToGroups.3pm.gz
/usr/share/man/man3/Bio::Roary::CommandLine::UniqueGenesPerSample.3pm.gz
/usr/share/man/man3/Bio::Roary::ContigsToGeneIDsFromGFF.3pm.gz
/usr/share/man/man3/Bio::Roary::Exceptions.3pm.gz
/usr/share/man/man3/Bio::Roary::External::Blastp.3pm.gz
/usr/share/man/man3/Bio::Roary::External::Cdhit.3pm.gz
/usr/share/man/man3/Bio::Roary::External::CheckTools.3pm.gz
/usr/share/man/man3/Bio::Roary::External::Fasttree.3pm.gz
/usr/share/man/man3/Bio::Roary::External::GeneAlignmentFromNucleotides.3pm.gz
/usr/share/man/man3/Bio::Roary::External::IterativeCdhit.3pm.gz
/usr/share/man/man3/Bio::Roary::External::Mafft.3pm.gz
/usr/share/man/man3/Bio::Roary::External::Makeblastdb.3pm.gz
/usr/share/man/man3/Bio::Roary::External::Mcl.3pm.gz
/usr/share/man/man3/Bio::Roary::External::PostAnalysis.3pm.gz
/usr/share/man/man3/Bio::Roary::External::Prank.3pm.gz
/usr/share/man/man3/Bio::Roary::ExtractCoreGenesFromSpreadsheet.3pm.gz
/usr/share/man/man3/Bio::Roary::ExtractProteomeFromGFF.3pm.gz
/usr/share/man/man3/Bio::Roary::ExtractProteomeFromGFFs.3pm.gz
/usr/share/man/man3/Bio::Roary::FilterFullClusters.3pm.gz
/usr/share/man/man3/Bio::Roary::FilterUnknownsFromFasta.3pm.gz
/usr/share/man/man3/Bio::Roary::GeneNamesFromGFF.3pm.gz
/usr/share/man/man3/Bio::Roary::GroupLabels.3pm.gz
/usr/share/man/man3/Bio::Roary::GroupStatistics.3pm.gz
/usr/share/man/man3/Bio::Roary::InflateClusters.3pm.gz
/usr/share/man/man3/Bio::Roary::IterativeCdhit.3pm.gz
/usr/share/man/man3/Bio::Roary::JobRunner::Local.3pm.gz
/usr/share/man/man3/Bio::Roary::JobRunner::Parallel.3pm.gz
/usr/share/man/man3/Bio::Roary::JobRunner::Role.3pm.gz
/usr/share/man/man3/Bio::Roary::LookupGeneFiles.3pm.gz
/usr/share/man/man3/Bio::Roary::MergeMultifastaAlignments.3pm.gz
/usr/share/man/man3/Bio::Roary::OrderGenes.3pm.gz
/usr/share/man/man3/Bio::Roary::Output::BlastIdentityFrequency.3pm.gz
/usr/share/man/man3/Bio::Roary::Output::CoreGeneAlignmentCoordinatesEMBL.3pm.gz
/usr/share/man/man3/Bio::Roary::Output::DifferenceBetweenSets.3pm.gz
/usr/share/man/man3/Bio::Roary::Output::EMBLHeaderCommon.3pm.gz
/usr/share/man/man3/Bio::Roary::Output::EmblGroups.3pm.gz
/usr/share/man/man3/Bio::Roary::Output::GroupMultifasta.3pm.gz
/usr/share/man/man3/Bio::Roary::Output::GroupsMultifastaNucleotide.3pm.gz
/usr/share/man/man3/Bio::Roary::Output::GroupsMultifastaProtein.3pm.gz
/usr/share/man/man3/Bio::Roary::Output::GroupsMultifastas.3pm.gz
/usr/share/man/man3/Bio::Roary::Output::GroupsMultifastasNucleotide.3pm.gz
/usr/share/man/man3/Bio::Roary::Output::NumberOfGroups.3pm.gz
/usr/share/man/man3/Bio::Roary::Output::QueryGroups.3pm.gz
/usr/share/man/man3/Bio::Roary::ParallelAllAgainstAllBlast.3pm.gz
/usr/share/man/man3/Bio::Roary::ParseGFFAnnotationRole.3pm.gz
/usr/share/man/man3/Bio::Roary::PostAnalysis.3pm.gz
/usr/share/man/man3/Bio::Roary::PrepareInputFiles.3pm.gz
/usr/share/man/man3/Bio::Roary::PresenceAbsenceMatrix.3pm.gz
/usr/share/man/man3/Bio::Roary::QC::Report.3pm.gz
/usr/share/man/man3/Bio::Roary::ReformatInputGFFs.3pm.gz
/usr/share/man/man3/Bio::Roary::ReorderSpreadsheet.3pm.gz
/usr/share/man/man3/Bio::Roary::SampleOrder.3pm.gz
/usr/share/man/man3/Bio::Roary::SequenceLengths.3pm.gz
/usr/share/man/man3/Bio::Roary::SortFasta.3pm.gz
/usr/share/man/man3/Bio::Roary::SplitGroups.3pm.gz
/usr/share/man/man3/Bio::Roary::SpreadsheetRole.3pm.gz
/usr/share/man/man3/Bio::Roary::UniqueGenesPerSample.3pm.gz
/usr/share/perl5/Bio/Roary.pm
/usr/share/perl5/Bio/Roary/AccessoryBinaryFasta.pm
/usr/share/perl5/Bio/Roary/AccessoryClustering.pm
/usr/share/perl5/Bio/Roary/AnalyseGroups.pm
/usr/share/perl5/Bio/Roary/AnnotateGroups.pm
/usr/share/perl5/Bio/Roary/AssemblyStatistics.pm
/usr/share/perl5/Bio/Roary/BedFromGFFRole.pm
/usr/share/perl5/Bio/Roary/ChunkFastaFile.pm
/usr/share/perl5/Bio/Roary/ClustersRole.pm
/usr/share/perl5/Bio/Roary/CombinedProteome.pm
/usr/share/perl5/Bio/Roary/ContigsToGeneIDsFromGFF.pm
/usr/share/perl5/Bio/Roary/Exceptions.pm
/usr/share/perl5/Bio/Roary/ExtractCoreGenesFromSpreadsheet.pm
/usr/share/perl5/Bio/Roary/ExtractProteomeFromGFF.pm
/usr/share/perl5/Bio/Roary/ExtractProteomeFromGFFs.pm
/usr/share/perl5/Bio/Roary/FilterFullClusters.pm
/usr/share/perl5/Bio/Roary/FilterUnknownsFromFasta.pm
/usr/share/perl5/Bio/Roary/GeneNamesFromGFF.pm
/usr/share/perl5/Bio/Roary/GroupLabels.pm
/usr/share/perl5/Bio/Roary/GroupStatistics.pm
/usr/share/perl5/Bio/Roary/InflateClusters.pm
/usr/share/perl5/Bio/Roary/IterativeCdhit.pm
/usr/share/perl5/Bio/Roary/LookupGeneFiles.pm
/usr/share/perl5/Bio/Roary/MergeMultifastaAlignments.pm
/usr/share/perl5/Bio/Roary/OrderGenes.pm
/usr/share/perl5/Bio/Roary/ParallelAllAgainstAllBlast.pm
/usr/share/perl5/Bio/Roary/ParseGFFAnnotationRole.pm
/usr/share/perl5/Bio/Roary/PostAnalysis.pm
/usr/share/perl5/Bio/Roary/PrepareInputFiles.pm
/usr/share/perl5/Bio/Roary/PresenceAbsenceMatrix.pm
/usr/share/perl5/Bio/Roary/ReformatInputGFFs.pm
/usr/share/perl5/Bio/Roary/ReorderSpreadsheet.pm
/usr/share/perl5/Bio/Roary/SampleOrder.pm
/usr/share/perl5/Bio/Roary/SequenceLengths.pm
/usr/share/perl5/Bio/Roary/SortFasta.pm
/usr/share/perl5/Bio/Roary/SplitGroups.pm
/usr/share/perl5/Bio/Roary/SpreadsheetRole.pm
/usr/share/perl5/Bio/Roary/UniqueGenesPerSample.pm
/usr/share/perl5/Bio/Roary/CommandLine/AssemblyStatistics.pm
/usr/share/perl5/Bio/Roary/CommandLine/Common.pm
/usr/share/perl5/Bio/Roary/CommandLine/CreatePanGenome.pm
/usr/share/perl5/Bio/Roary/CommandLine/ExtractProteomeFromGff.pm
/usr/share/perl5/Bio/Roary/CommandLine/GeneAlignmentFromNucleotides.pm
/usr/share/perl5/Bio/Roary/CommandLine/IterativeCdhit.pm
/usr/share/perl5/Bio/Roary/CommandLine/ParallelAllAgainstAllBlastp.pm
/usr/share/perl5/Bio/Roary/CommandLine/QueryRoary.pm
/usr/share/perl5/Bio/Roary/CommandLine/Roary.pm
/usr/share/perl5/Bio/Roary/CommandLine/RoaryCoreAlignment.pm
/usr/share/perl5/Bio/Roary/CommandLine/RoaryPostAnalysis.pm
/usr/share/perl5/Bio/Roary/CommandLine/RoaryReorderSpreadsheet.pm
/usr/share/perl5/Bio/Roary/CommandLine/TransferAnnotationToGroups.pm
/usr/share/perl5/Bio/Roary/CommandLine/UniqueGenesPerSample.pm
/usr/share/perl5/Bio/Roary/External/Blastp.pm
/usr/share/perl5/Bio/Roary/External/Cdhit.pm
/usr/share/perl5/Bio/Roary/External/CheckTools.pm
/usr/share/perl5/Bio/Roary/External/Fasttree.pm
/usr/share/perl5/Bio/Roary/External/GeneAlignmentFromNucleotides.pm
/usr/share/perl5/Bio/Roary/External/IterativeCdhit.pm
/usr/share/perl5/Bio/Roary/External/Mafft.pm
/usr/share/perl5/Bio/Roary/External/Makeblastdb.pm
/usr/share/perl5/Bio/Roary/External/Mcl.pm
/usr/share/perl5/Bio/Roary/External/PostAnalysis.pm
/usr/share/perl5/Bio/Roary/External/Prank.pm
/usr/share/perl5/Bio/Roary/JobRunner/Local.pm
/usr/share/perl5/Bio/Roary/JobRunner/Parallel.pm
/usr/share/perl5/Bio/Roary/JobRunner/Role.pm
/usr/share/perl5/Bio/Roary/Output/BlastIdentityFrequency.pm
/usr/share/perl5/Bio/Roary/Output/CoreGeneAlignmentCoordinatesEMBL.pm
/usr/share/perl5/Bio/Roary/Output/DifferenceBetweenSets.pm
/usr/share/perl5/Bio/Roary/Output/EMBLHeaderCommon.pm
/usr/share/perl5/Bio/Roary/Output/EmblGroups.pm
/usr/share/perl5/Bio/Roary/Output/GroupMultifasta.pm
/usr/share/perl5/Bio/Roary/Output/GroupsMultifastaNucleotide.pm
/usr/share/perl5/Bio/Roary/Output/GroupsMultifastaProtein.pm
/usr/share/perl5/Bio/Roary/Output/GroupsMultifastas.pm
/usr/share/perl5/Bio/Roary/Output/GroupsMultifastasNucleotide.pm
/usr/share/perl5/Bio/Roary/Output/NumberOfGroups.pm
/usr/share/perl5/Bio/Roary/Output/QueryGroups.pm
/usr/share/perl5/Bio/Roary/QC/Report.pm