[ ソース: snakemake ]
パッケージ: snakemake (6.15.1-2)
snakemake に関するリンク
Trisquel の資源:
snakemake ソースパッケージをダウンロード:
メンテナ:
Original Maintainers:
- Debian Med Packaging Team (メールアーカイブ)
- Kevin Murray
- Rebecca N. Palmer
外部の資源:
- ホームページ [snakemake.readthedocs.io]
類似のパッケージ:
pythonic workflow management system
Build systems like GNU Make are frequently used to create complicated workflows, e.g. in bioinformatics. This project aims to reduce the complexity of creating workflows by providing a clean and modern domain specific language (DSL) in Python style, together with a fast and comfortable execution environment.
その他の snakemake 関連パッケージ
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- dep: ca-certificates
- Common CA certificates
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: python3-appdirs
- determining appropriate platform-specific directories (Python 3)
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- dep: python3-configargparse
- replacement for argparse with config files and environment variables (Python 3)
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- dep: python3-connection-pool
- thread-safe connection pool for Python3
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- dep: python3-datrie
- Super-fast, efficiently stored Trie for Python 3
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- dep: python3-docutils
- text processing system for reStructuredText (implemented in Python 3)
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- dep: python3-filelock
- platform independent file locking module
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- dep: python3-git
- Python library to interact with Git repositories - Python 3.x
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- dep: python3-jsonschema
- An(other) implementation of JSON Schema (Draft 3 and 4) - Python 3.x
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- dep: python3-nbformat
- Jupyter notebook format (Python 3)
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- dep: python3-pkg-resources
- Package Discovery and Resource Access using pkg_resources
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- dep: python3-psutil
- module providing convenience functions for managing processes (Python3)
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- dep: python3-pulp (>= 2.0~)
- LP modeler - Python 3.x
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- dep: python3-ratelimiter
- simple Python library for limiting the rate of operations
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- dep: python3-requests
- elegant and simple HTTP library for Python3, built for human beings
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- dep: python3-smart-open (>= 3.0~)
- utils for streaming large files
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- dep: python3-stopit
- Timeout control decorator and context manager for Python3
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- dep: python3-tabulate
- pretty-print tabular data in Python3
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- dep: python3-toposort
- topological sort algorithm - Python 3 module
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- dep: python3-wrapt
- decorators, wrappers and monkey patching. - Python 3.x
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- dep: python3-yaml
- YAML parser and emitter for Python3
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- rec: cwltool
- Common Workflow Language reference implementation
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- rec: imagemagick
- image manipulation programs -- binaries
以下のパッケージによって提供される仮想パッケージでもあります: graphicsmagick-imagemagick-compat, imagemagick-6.q16
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- rec: python3-azure-storage
- Microsoft Azure Storage Library for Python 3.x
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- rec: python3-biopython
- Python3 library for bioinformatics
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- rec: python3-boto3
- Python interface to Amazon's Web Services - Python 3.x
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- rec: python3-botocore
- Low-level, data-driven core of boto 3 (Python 3)
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- rec: python3-drmaa
- interface to DRMAA-compliant distributed resource management systems
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- rec: python3-dropbox
- Official Dropbox API Client (Python3 version)
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- rec: python3-flask
- micro web framework based on Werkzeug and Jinja2 - Python 3.x
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- rec: python3-ftputil
- high-level FTP client library for Python
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- rec: python3-irodsclient
- Client API for iRods
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- rec: python3-jinja2
- small but fast and easy to use stand-alone template engine
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- rec: python3-kubernetes
- Kubernetes Python client - Python 3.x
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- rec: python3-networkx
- tool to create, manipulate and study complex networks (Python3)
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- rec: python3-pygments
- syntax highlighting package written in Python 3
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- rec: python3-pygraphviz
- Python interface to the Graphviz graph layout and visualization package (Python 3)
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- rec: python3-tz
- Python3 version of the Olson timezone database
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- rec: python3-urllib3
- HTTP library with thread-safe connection pooling for Python3
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- rec: python3-yappi
- Yet Another Python Profiler - Python 3.x
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- sug: snakemake-doc
- documentation for pythonic workflow management system