[ aramo ]
[ ソース: pycoqc ]
パッケージ: pycoqc (2.5.2+dfsg-3)
pycoqc に関するリンク
Trisquel の資源:
pycoqc ソースパッケージをダウンロード:
メンテナ:
Original Maintainers:
- Debian Med Packaging Team (メールアーカイブ)
- Andreas Tille
- Nilesh Patra
外部の資源:
- ホームページ [github.com]
類似のパッケージ:
computes metrics and generates Interactive QC plots
PycoQC computes metrics and generates interactive QC plots for Oxford Nanopore technologies sequencing data
PycoQC relies on the sequencing_summary.txt file generated by Albacore and Guppy, but if needed it can also generates a summary file from basecalled fast5 files. The package supports 1D and 1D2 runs generated with Minion, Gridion and Promethion devices and basecalled with Albacore 1.2.1+ or Guppy 2.1.3+
その他の pycoqc 関連パッケージ
|
|
|
-
- dep: python3
- interactive high-level object-oriented language (default python3 version)
-
- dep: python3-h5py
- general-purpose Python interface to hdf5
-
- dep: python3-h5py-serial
- general-purpose Python interface to hdf5 (Python 3 serial)
-
- dep: python3-jinja2
- small but fast and easy to use stand-alone template engine
-
- dep: python3-numpy
- Fast array facility to the Python 3 language
-
- dep: python3-pandas
- data structures for "relational" or "labeled" data
-
- dep: python3-plotly (>= 4.1.0)
- Python 3 plotting library for publication-quality graphs
-
- dep: python3-pysam
- interface for the SAM/BAM sequence alignment and mapping format (Python 3)
-
- dep: python3-scipy
- scientific tools for Python 3
-
- dep: python3-tqdm
- fast, extensible progress bar for Python 3 and CLI tool