[ ソース: ariba ]
パッケージ: ariba (2.14.6+ds-3build1)
ariba に関するリンク
Trisquel の資源:
ariba ソースパッケージをダウンロード:
メンテナ:
Original Maintainers:
- Debian Med Packaging Team (メールアーカイブ)
- Sascha Steinbiss
外部の資源:
- ホームページ [github.com]
類似のパッケージ:
Antibiotic Resistance Identification By Assembly
ARIBA is a tool that identifies antibiotic resistance genes by running local assemblies. The input is a FASTA file of reference genes and paired sequencing reads. ARIBA reports which of the reference genes were found, plus detailed information on the quality of the assemblies and any variants between the sequencing reads and the reference genes.
その他の ariba 関連パッケージ
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- dep: bowtie2 (>= 2.1.0)
- ultrafast memory-efficient short read aligner
-
- dep: cd-hit
- suite of programs designed to quickly group sequences
-
- dep: fastaq (>= 3.12.0)
- FASTA and FASTQ file manipulation tools
-
- dep: libc6 (>= 2.14) [amd64]
- GNU C Library: Shared libraries
以下のパッケージによって提供される仮想パッケージでもあります: libc6-udeb
- dep: libc6 (>= 2.17) [amd64 以外]
-
- dep: libfml0 (>= 0.1-4~)
- library for assembling Illumina short reads in small regions
-
- dep: libgcc-s1 (>= 3.3.1)
- GCC support library
-
- dep: libminimap0 (>= 0.2)
- library for approximate mapping of long biosequences
-
- dep: libstdc++6 (>= 5.2)
- GNU Standard C++ Library v3
-
- dep: mash
- fast genome and metagenome distance estimation using MinHash
-
- dep: mummer
- Efficient sequence alignment of full genomes
-
- dep: python3
- interactive high-level object-oriented language (default python3 version)
- dep: python3 (<< 3.11)
- dep: python3 (>= 3.10~)
-
- dep: python3-biopython
- Python3 library for bioinformatics
-
- dep: python3-bs4
- error-tolerant HTML parser for Python 3
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- dep: python3-dendropy
- DendroPy Phylogenetic Computing Library (Python 3)
-
- dep: python3-matplotlib
- Python based plotting system in a style similar to Matlab (Python 3)
-
- dep: python3-pymummer (>= 0.10.2)
- Python 3 interface to MUMmer
-
- dep: python3-pysam (>= 0.9.1)
- interface for the SAM/BAM sequence alignment and mapping format (Python 3)
-
- dep: python3-tk
- Tkinter - Writing Tk applications with Python 3.x
-
- dep: zlib1g (>= 1:1.1.4)
- compression library - runtime
-
- sug: spades
- genome assembler for single-cell and isolates data sets