[ aramo ]
[ ソース: ngmlr ]
パッケージ: ngmlr (0.2.7+git20210816.a2a31fb+dfsg-2)
ngmlr に関するリンク
Trisquel の資源:
ngmlr ソースパッケージをダウンロード:
- [ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2.dsc]
- [ngmlr_0.2.7+git20210816.a2a31fb+dfsg.orig.tar.gz]
- [ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2.debian.tar.xz]
メンテナ:
Original Maintainers:
- Debian Med Packaging Team (メールアーカイブ)
- Nilesh Patra
外部の資源:
- ホームページ [github.com]
類似のパッケージ:
CoNvex Gap-cost alignMents for Long Reads
Ngmlr is a long-read mapper designed to sensitively align PacBilo or Oxford Nanopore to (large) reference genomes. It was designed to quickly and correctly align the reads, including those spanning (complex) structural variations. Ngmlr uses an SV aware k-mer search to find approximate mapping locations for a read and then a banded Smith- Waterman alignment algorithm to compute the final alignment. Ngmlr uses a convex gap cost model that penalizes gap extensions for longer gaps less than for shorter ones to compute precise alignments.
その他の ngmlr 関連パッケージ
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- dep: libc6 (>= 2.34)
- GNU C Library: Shared libraries
以下のパッケージによって提供される仮想パッケージでもあります: libc6-udeb
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- dep: libgcc-s1 (>= 3.3.1)
- GCC support library
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- dep: libssw0 (>= 1.1)
- fast SIMD parallelized implementation of the Smith-Waterman algorithm
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- dep: libstdc++6 (>= 11)
- GNU Standard C++ Library v3
-
- dep: zlib1g (>= 1:1.1.4)
- compression library - runtime