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パッケージ: libvcflib1 (1.0.3+dfsg-1)

C++ library for parsing and manipulating VCF files

The Variant Call Format (VCF) is a flat-file, tab-delimited textual format intended to concisely describe reference-indexed variations between individuals. VCF provides a common interchange format for the description of variation in individuals and populations of samples, and has become the defacto standard reporting format for a wide array of genomic variant detectors.

vcflib provides methods to manipulate and interpret sequence variation as it can be described by VCF. It is both:

 * an API for parsing and operating on records of genomic variation as it can
   be described by the VCF format,
 * and a collection of command-line utilities for executing complex
   manipulations on VCF files.

その他の libvcflib1 関連パッケージ

  • 依存
  • 推奨
  • 提案
  • dep: libc6 (>= 2.29)
    GNU C Library: Shared libraries
    以下のパッケージによって提供される仮想パッケージでもあります: libc6-udeb
  • dep: libdisorder0 (>= 0.0.2)
    library for entropy measurement of byte streams
  • dep: libfastahack0 (>= 1.0.0+dfsg)
    library for indexing and sequence extraction from FASTA files (lib)
  • dep: libgcc-s1 (>= 3.5)
    GCC support library
  • dep: libsmithwaterman0 (>= 0.0+git20160702.2610e25)
    determine similar regions between two strings or genomic sequences (lib)
  • dep: libstdc++6 (>= 11)
    GNU Standard C++ Library v3
  • dep: libtabixpp0 (>= 1.0.0)
    C++ wrapper to tabix indexer

libvcflib1 のダウンロード

すべての利用可能アーキテクチャ向けのダウンロード
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armhf 137.4 kB265 kB [ファイル一覧]