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[ aramo ]
[ ソース: maffilter ]
パッケージ: maffilter (1.3.1+dfsg-3)
maffilter に関するリンク
Trisquel の資源:
maffilter ソースパッケージをダウンロード:
- [maffilter_1.3.1+dfsg-3.dsc]
- [maffilter_1.3.1+dfsg.orig.tar.xz]
- [maffilter_1.3.1+dfsg-3.debian.tar.xz]
メンテナ:
Original Maintainers:
- Debian Med Packaging Team (メールアーカイブ)
- Andreas Tille
- Julien Dutheil
- Pranav Ballaney
外部の資源:
- ホームページ [jydu.github.io]
類似のパッケージ:
process genome alignment in the Multiple Alignment Format
MafFilter applies a series of "filters" to a MAF file, in order to clean it, extract data and computer statistics while keeping track of the associated meta-data such as genome coordinates and quality scores.
* It can process the alignment to remove low-quality / ambiguous / masked regions. * It can export data into a single or multiple alignment file in format such as Fasta or Clustal. * It can read annotation data in GFF or GTF format, and extract the corresponding alignment. * It can perform sliding windows calculations. * It can reconstruct phylogeny/genealogy along the genome alignment. * It can compute population genetics statistics, such as site frequency spectrum, number of fixed/polymorphic sites, etc.
その他の maffilter 関連パッケージ
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- dep: libboost-iostreams1.74.0 (>= 1.74.0)
- Boost.Iostreams Library
-
- dep: libbpp-core4 (>= 2.4.1)
- Bio++ Core library
-
- dep: libbpp-phyl-omics3 (>= 2.4.1)
- Bio++ Phylogenetics library: genomics components
-
- dep: libbpp-phyl12 (>= 2.4.1)
- Bio++ Phylogenetic library
-
- dep: libbpp-seq-omics3 (>= 2.4.1)
- Bio++ Sequence library: genomics components
-
- dep: libbpp-seq12 (>= 2.4.1)
- Bio++ Sequence library
-
- dep: libc6 (>= 2.34)
- GNU C Library: Shared libraries
以下のパッケージによって提供される仮想パッケージでもあります: libc6-udeb
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- dep: libgcc-s1 (>= 3.5)
- GCC support library
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- dep: libstdc++6 (>= 11)
- GNU Standard C++ Library v3
-
- sug: maffilter-examples
- process genome alignment in the Multiple Alignment Format (example data)