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パッケージ: nanook (1.33+dfsg-4)

pre- and post-alignment analysis of nanopore sequencing data

NanoOK is a flexible, multi-reference software for pre- and post- alignment analysis of nanopore sequencing data, quality and error profiles.

NanoOK (pronounced na-nook) is a tool for extraction, alignment and analysis of Nanopore reads. NanoOK will extract reads as FASTA or FASTQ files, align them (with a choice of alignment tools), then generate a comprehensive multi-page PDF report containing yield, accuracy and quality analysis. Along the way, it generates plain text files which can be used for further analysis, as well as graphs suitable for inclusion in presentations and papers.

その他の nanook 関連パッケージ

  • 依存
  • 推奨
  • 提案
  • rec: blasr
    mapping single-molecule sequencing reads
  • rec: bwa
    Burrows-Wheeler Aligner
  • sug: default-jre
    Standard Java or Java compatible Runtime

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