[ aramo ]
[ ソース: pizzly ]
パッケージ: pizzly (0.37.3+ds-6)
pizzly に関するリンク
Trisquel の資源:
pizzly ソースパッケージをダウンロード:
メンテナ:
Original Maintainers:
- Debian Med Packaging Team (メールアーカイブ)
- Steffen Moeller
- Nilesh Patra
外部の資源:
- ホームページ [github.com]
類似のパッケージ:
Identifies gene fusions in RNA sequencing data
For the interpretation of the transcriptome (the abundance and sequence of RNA) of tomour cells one is particularly interested in transcripts that cannot be mapped to single genes but that are seen to be fused as parts from two genes. Likely eplanations are chromosomal translocations.
Pizzly can identify novel such peculiarities, building on interpretations on variable splicing by the tool kallisto. Both tools are elements of the bcbio workflow.
その他の pizzly 関連パッケージ
|
|
|
-
- dep: kallisto
- near-optimal RNA-Seq quantification
-
- dep: libc6 (>= 2.34)
- GNU C Library: Shared libraries
以下のパッケージによって提供される仮想パッケージでもあります: libc6-udeb
-
- dep: libgcc-s1 (>= 3.5)
- GCC support library
-
- dep: libstdc++6 (>= 11)
- GNU Standard C++ Library v3
-
- dep: python3
- interactive high-level object-oriented language (default python3 version)
-
- dep: zlib1g (>= 1:1.1.4)
- compression library - runtime
-
- rec: python3-h5py
- general-purpose Python interface to hdf5