パッケージ: kallisto (0.46.2+dfsg-3)
kallisto に関するリンク
Trisquel の資源:
kallisto ソースパッケージをダウンロード:
- [kallisto_0.46.2+dfsg-3.dsc]
- [kallisto_0.46.2+dfsg.orig.tar.xz]
- [kallisto_0.46.2+dfsg-3.debian.tar.xz]
メンテナ:
Original Maintainers:
- Debian Med Packaging Team (メールアーカイブ)
- Andreas Tille
外部の資源:
- ホームページ [pachterlab.github.io]
類似のパッケージ:
near-optimal RNA-Seq quantification
Kallisto is a program for quantifying abundances of transcripts from RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads. It is based on the novel idea of pseudoalignment for rapidly determining the compatibility of reads with targets, without the need for alignment. On benchmarks with standard RNA-Seq data, kallisto can quantify 30 million human reads in less than 3 minutes on a Mac desktop computer using only the read sequences and a transcriptome index that itself takes less than 10 minutes to build. Pseudoalignment of reads preserves the key information needed for quantification, and kallisto is therefore not only fast, but also as accurate than existing quantification tools. In fact, because the pseudoalignment procedure is robust to errors in the reads, in many benchmarks kallisto significantly outperforms existing tools.
その他の kallisto 関連パッケージ
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- dep: libc6 (>= 2.33)
- GNU C Library: Shared libraries
以下のパッケージによって提供される仮想パッケージでもあります: libc6-udeb
-
- dep: libgcc-s1 (>= 3.3.1) [amd64, arm64]
- GCC support library
- dep: libgcc-s1 (>= 3.4.4) [ppc64el]
- dep: libgcc-s1 (>= 3.5) [armhf]
-
- dep: libhts3 (>= 1.10)
- C library for high-throughput sequencing data formats
-
- dep: libstdc++6 (>= 6) [ppc64el 以外]
- GNU Standard C++ Library v3
- dep: libstdc++6 (>= 9) [ppc64el]
-
- dep: zlib1g (>= 1:1.1.4)
- compression library - runtime