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パッケージ: python3-unifrac (1.3-2build1)

high-performance phylogenetic diversity calculations

The de facto repository for high-performance phylogenetic diversity calculations. The methods in this repository are based on an implementation of the Strided State UniFrac algorithm which is faster, and uses less memory than Fast UniFrac. Strided State UniFrac supports Unweighted UniFrac, Weighted UniFrac, Generalized UniFrac, Variance Adjusted UniFrac and meta UniFrac. This repository also includes Stacked Faith (manuscript in preparation), a method for calculating Faith's PD that is faster and uses less memory than the Fast UniFrac-based reference implementation.

This package contains the Python3 module.

その他の python3-unifrac 関連パッケージ

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    GNU C Library: Shared libraries
    以下のパッケージによって提供される仮想パッケージでもあります: libc6-udeb
  • dep: libssu0 (>= 1.4)
    high-performance phylogenetic diversity calculations (lib)
  • dep: python3
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    dep: python3 (<< 3.13)
    dep: python3 (>= 3.12~)
  • dep: python3-biom-format
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  • dep: python3-h5py (>= 3.3.0)
    general-purpose Python interface to hdf5
  • dep: python3-iow
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  • dep: python3-numpy (>= 1:1.25.0)
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  • dep: python3-numpy-abi9
    以下のパッケージによって提供される仮想パッケージです: python3-numpy
  • dep: python3-skbio (>= 0.5.8-3~)
    Python3 data structures, algorithms, educational resources for bioinformatic

python3-unifrac のダウンロード

すべての利用可能アーキテクチャ向けのダウンロード
アーキテクチャ パッケージサイズ インストールサイズ ファイル
amd64 149.3 kB700 kB [ファイル一覧]