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パッケージ: r-bioc-genomeinfodb (1.14.0-1)

BioConductor utilities for manipulating chromosome identifiers

This package contains BioConductor utilities for manipulating chromosome and other 'seqname' identifiers.

The Seqnames package contains data and functions that define and allow translation between different chromosome sequence naming conventions (e.g., "chr1" versus "1"), including a function that attempts to place sequence names in their natural, rather than lexicographic, order.

その他の r-bioc-genomeinfodb 関連パッケージ

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  • dep: r-api-3.4
    以下のパッケージによって提供される仮想パッケージです: r-base-core
  • dep: r-base-core (>= 3.4.2-1ubuntu4)
    GNU R core of statistical computation and graphics system
  • dep: r-bioc-biocgenerics (>= 0.13.8)
    generic functions for Bioconductor
  • dep: r-bioc-genomeinfodbdata
    BioConductor species and taxonomy ID look up tables
  • dep: r-bioc-iranges (>= 1.99.26)
    GNU R low-level containers for storing sets of integer ranges
  • dep: r-bioc-s4vectors (>= 0.9.25)
    BioConductor S4 implementation of vectors and lists
  • dep: r-cran-rcurl
    GNU R General network (HTTP/FTP/...) client interface
  • sug: r-bioc-bsgenome
    BioConductor infrastructure for Biostrings-based genome data packages
  • sug: r-bioc-genomicalignments
    BioConductor representation and manipulation of short genomic alignments
  • sug: r-bioc-genomicfeatures
    GNU R tools for making and manipulating transcript centric annotations
  • sug: r-bioc-genomicranges
    BioConductor representation and manipulation of genomic intervals
  • sug: r-bioc-rsamtools
    GNU R binary alignment (BAM), variant call (BCF), or tabix file import
  • sug: r-cran-knitr
    GNU R package for dynamic report generation using Literate Programming
  • sug: r-cran-runit
    GNU R package providing unit testing framework

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