パッケージ: progressivemauve (1.2.0+4713+dfsg-1)
progressivemauve に関するリンク
Trisquel の資源:
progressivemauve ソースパッケージをダウンロード:
- [progressivemauve_1.2.0+4713+dfsg-1.dsc]
- [progressivemauve_1.2.0+4713+dfsg.orig.tar.xz]
- [progressivemauve_1.2.0+4713+dfsg-1.debian.tar.xz]
メンテナ:
Original Maintainers:
- Debian Med Packaging Team (メールアーカイブ)
- Andreas Tille
外部の資源:
- ホームページ [darlinglab.org]
類似のパッケージ:
multiple genome alignment algorithms
The mauveAligner and progressiveMauve alignment algorithms have been implemented as command-line programs included with the downloadable Mauve software. When run from the command-line, these programs provide options not yet available in the graphical interface.
Mauve is a system for efficiently constructing multiple genome alignments in the presence of large-scale evolutionary events such as rearrangement and inversion. Multiple genome alignment provides a basis for research into comparative genomics and the study of evolutionary dynamics. Aligning whole genomes is a fundamentally different problem than aligning short sequences.
Mauve has been developed with the idea that a multiple genome aligner should require only modest computational resources. It employs algorithmic techniques that scale well in the amount of sequence being aligned. For example, a pair of Y. pestis genomes can be aligned in under a minute, while a group of 9 divergent Enterobacterial genomes can be aligned in a few hours.
Mauve computes and interactively visualizes genome sequence comparisons. Using FastA or GenBank sequence data, Mauve constructs multiple genome alignments that identify large-scale rearrangement, gene gain, gene loss, indels, and nucleotide substutition.
Mauve is developed at the University of Wisconsin.
その他の progressivemauve 関連パッケージ
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- dep: libboost-filesystem1.65.1
- filesystem operations (portable paths, iteration over directories, etc) in C++
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- dep: libboost-iostreams1.65.1
- Boost.Iostreams Library
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- dep: libboost-program-options1.65.1
- program options library for C++
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- dep: libboost-system1.65.1
- Operating system (e.g. diagnostics support) library
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- dep: libc6 (>= 2.14) [amd64]
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以下のパッケージによって提供される仮想パッケージでもあります: libc6-udeb
- dep: libc6 (>= 2.4) [i386]
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- dep: libgcc1 (>= 1:3.0) [amd64]
- GCC support library
- dep: libgcc1 (>= 1:4.2) [i386]
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- dep: libgenome-1.3-0v5
- toolkit for developing bioinformatic related software
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- dep: libmems-1.6-1v5
- library to support DNA string matching and comparative genomics
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- dep: libstdc++6 (>= 5.2)
- GNU Standard C++ Library v3
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- enh: mauve-aligner
- multiple genome alignment