パッケージ: rna-star (2.5.4b+dfsg-1)
rna-star に関するリンク
Trisquel の資源:
rna-star ソースパッケージをダウンロード:
- [rna-star_2.5.4b+dfsg-1.dsc]
- [rna-star_2.5.4b+dfsg.orig.tar.xz]
- [rna-star_2.5.4b+dfsg-1.debian.tar.xz]
メンテナ:
Original Maintainers:
- Debian Med Packaging Team (メールアーカイブ)
- Steffen Moeller
- Andreas Tille
- Sascha Steinbiss
外部の資源:
- ホームページ [github.com]
類似のパッケージ:
ultrafast universal RNA-seq aligner
Spliced Transcripts Alignment to a Reference (STAR) software based on a previously undescribed RNA-seq alignment algorithm that uses sequential maximum mappable seed search in uncompressed suffix arrays followed by seed clustering and stitching procedure. STAR outperforms other aligners by a factor of >50 in mapping speed, aligning to the human genome 550 million 2 × 76 bp paired-end reads per hour on a modest 12-core server, while at the same time improving alignment sensitivity and precision. In addition to unbiased de novo detection of canonical junctions, STAR can discover non-canonical splices and chimeric (fusion) transcripts, and is also capable of mapping full-length RNA sequences. Using Roche 454 sequencing of reverse transcription polymerase chain reaction amplicons, the authors experimentally validated 1960 novel intergenic splice junctions with an 80-90% success rate, corroborating the high precision of the STAR mapping strategy.
その他の rna-star 関連パッケージ
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- dep: libc6 (>= 2.14)
- GNU C Library: Shared libraries
以下のパッケージによって提供される仮想パッケージでもあります: libc6-udeb
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- dep: libgcc1 (>= 1:3.3.1)
- GCC support library
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- dep: libgomp1 (>= 4.9)
- GCC OpenMP (GOMP) support library
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- dep: libhts2 (>= 1.0)
- C library for high-throughput sequencing data formats
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- dep: libstdc++6 (>= 5.2)
- GNU Standard C++ Library v3