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パッケージ: assemblytics (0~20170131+ds-2)

detect and analyze structural variants from a genome assembly

Assemblytics incorporates a unique anchor filtering approach to increase robustness to repetitive elements, and identifies six classes of variants based on their distinct alignment signatures. Assemblytics can be applied both to comparing aberrant genomes, such as human cancers, to a reference, or to identify differences between related species.

その他の assemblytics 関連パッケージ

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  • dep: perl
    Larry Wall's Practical Extraction and Report Language
  • dep: python
    interactive high-level object-oriented language (default version)
  • dep: python-numpy
    Numerical Python adds a fast array facility to the Python language
  • dep: r-base-core
    GNU R core of statistical computation and graphics system
  • dep: r-cran-ggplot2
    implementation of the Grammar of Graphics
  • dep: r-cran-plyr
    tools for splitting, applying and combining data
  • dep: r-cran-rcolorbrewer
    GNU R package providing suitable color palettes
  • rec: mummer
    Efficient sequence alignment of full genomes

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