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パッケージ: iva (1.0.9+ds-4ubuntu1)

iva に関するリンク

iva

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iterative virus sequence assembler

IVA is a de novo assembler designed to assemble virus genomes that have no repeat sequences, using Illumina read pairs sequenced from mixed populations at extremely high depth.

IVA's main algorithm works by iteratively extending contigs using aligned read pairs. Its input can be just read pairs, or additionally you can provide an existing set of contigs to be extended. Alternatively, it can take reads together with a reference sequence.

その他の iva 関連パッケージ

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  • rec: bioperl
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    GNU R core of statistical computation and graphics system
  • rec: trimmomatic
    flexible read trimming tool for Illumina NGS data

iva のダウンロード

すべての利用可能アーキテクチャ向けのダウンロード
アーキテクチャ パッケージサイズ インストールサイズ ファイル
amd64 8,377.0 kB8766 kB [ファイル一覧]