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パッケージ: msxpertsuite (4.1.0-1)

mass spectrometry software suite - executable files

msXpertSuite is a collection of programs to simulate and analyse mass spectrometric data obtained on linear (bio-)polymers. It is the successor of GNU polyXmass, first, and of massXpert, second.

Three programs, massXpert, mineXpert and convXpert allow the following:

massXpert:

 - making brand new polymer chemistry definitions;
 - using the definitions to perform easy calculations in a desktop
   calculator-like manner;
 - performing sophisticated polymer sequence editing and simulations;
 - perform m/z list comparisons;

Chemical simulations encompass cleavage (either chemical or enzymatic), gas-phase fragmentations, chemical modification of any monomer in the polymer sequence, cross-linking of monomers in the sequence, arbitrary mass searches, calculation of the isotopic pattern...

mineXpert:

 - Open mass spectrometry data files (mzML, mzXML, asc, xy, ...);
 - Calculate and display the TIC chromatogram;
 - For mobility data, calculate and display a mz=f(dt) color map;
 - Integrate the data from the TIC chromatogram or color map
   - to mass spectrum;
   - to drift spectrum;
   - back to TIC chromatogram (XIC chromatogram);
   - reverse operations;
 - Export the data to text files;
 - Slice a big initial file into smaller chunks for easier mining;
 - Define how mining activity is recorded on disk for later use;
 - Convert mzML files into a private (albeit open) mass spectrometry
   format that allows better performance (based on SQLite3).

This package contains the binary programs.

その他の msxpertsuite 関連パッケージ

  • 依存
  • 推奨
  • 提案
  • dep: libc6 (>= 2.14) [amd64]
    GNU C Library: Shared libraries
    以下のパッケージによって提供される仮想パッケージでもあります: libc6-udeb
    dep: libc6 (>= 2.4) [i386]
  • dep: libgcc1 (>= 1:3.0)
    GCC support library
  • dep: libgomp1 (>= 4.9)
    GCC OpenMP (GOMP) support library
  • dep: libpwiz3 (>= 3.0.0)
    library to perform proteomics data analyses (runtime)
  • dep: libqcustomplot1.3
    Qt C++ widget for plotting
  • dep: libqt5core5a (>= 5.9.0~beta)
    Qt 5 core module
  • dep: libqt5gui5 (>= 5.8.0)
    Qt 5 GUI module
  • dep: libqt5script5 (>= 5.6.0~beta)
    Qt 5 script module
  • dep: libqt5sql5 (>= 5.7.0)
    Qt 5 SQL module
  • dep: libqt5svg5 (>= 5.6.0~beta)
    Qt 5 SVG module
  • dep: libqt5widgets5 (>= 5.7.0)
    Qt 5 widgets module
  • dep: libqt5xml5 (>= 5.7.0)
    Qt 5 XML module
  • dep: libstdc++6 (>= 5.2)
    GNU Standard C++ Library v3
  • dep: msxpertsuite-data (<< 4.1.0A~)
    mass spectrometry software suite - arch-indep data
    dep: msxpertsuite-data (>= 4.1.0)

msxpertsuite のダウンロード

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アーキテクチャ パッケージサイズ インストールサイズ ファイル
amd64 1,758.3 kB7815 kB [ファイル一覧]
i386 1,825.0 kB7741 kB [ファイル一覧]