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[ Source: htslib  ]

Package: tabix (1.10.2-3ubuntu0.1)

generic indexer for TAB-delimited genome position files

Tabix indexes files where some columns indicate sequence coordinates: name (usually a chromosome), start and stop. The input data file must be position sorted and compressed by bgzip (provided in this package), which has a gzip like interface. After indexing, tabix is able to quickly retrieve data lines by chromosomal coordinates. Fast data retrieval also works over network if an URI is given as a file name.

This version of tabix is built from the HTSlib source.

Other Packages Related to tabix

  • depends
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  • dep: libc6 (>= 2.15)
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  • dep: libcurl3-gnutls (>= 7.18.0)
    easy-to-use client-side URL transfer library (GnuTLS flavour)
  • dep: libdeflate0 (>= 1.0)
    fast, whole-buffer DEFLATE-based compression and decompression
  • dep: liblzma5 (>= 5.1.1alpha+20120614)
    XZ-format compression library
  • dep: libssl1.1 (>= 1.1.0)
    Secure Sockets Layer toolkit - shared libraries
  • dep: zlib1g (>= 1:1.1.4)
    compression library - runtime

Download tabix

Download for all available architectures
Architecture Package Size Installed Size Files
amd64 354.4 kB1304 kB [list of files]
armhf 315.5 kB853 kB [list of files]