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Package: bio-tradis (1.4.5+dfsg2-1)

analyse the output from TraDIS analyses of genomic sequences

Bio-Tradis contains a set of tools to analyse the output from TraDIS analyses.

The Bio-Tradis analysis pipeline is implemented as an extensible Perl library which can either be used as is, or as a basis for the development of more advanced analysis tools.

Please note: You need to manually install BioConductor Edger which can not be distributed by Debian in recent version since it is using non-distributable code locfit.

Other Packages Related to bio-tradis

  • depends
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  • dep: libbio-perl-perl
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  • dep: libexception-class-perl
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  • dep: libmoose-perl
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  • dep: libtext-csv-perl
    comma-separated values manipulator (using XS or PurePerl)
  • dep: libtry-tiny-perl
    module providing minimalistic try/catch
  • dep: perl
    Larry Wall's Practical Extraction and Report Language
  • dep: r-base-core
    GNU R core of statistical computation and graphics system
  • dep: r-cran-getopt
    GNU R package providing command-line parsing functionality
  • dep: r-cran-mass
    GNU R package of Venables and Ripley's MASS
  • dep: samtools
    processing sequence alignments in SAM, BAM and CRAM formats
  • dep: smalt
    Sequence Mapping and Alignment Tool
  • dep: tabix
    generic indexer for TAB-delimited genome position files
  • sug: artemis
    genome browser and annotation tool
  • sug: r-bioc-edger
    Package not available

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