Package: r-bioc-bitseq (1.30.0+dfsg-1build1)
Links for r-bioc-bitseq
Trisquel Resources:
Download Source Package r-bioc-bitseq:
- [r-bioc-bitseq_1.30.0+dfsg-1build1.dsc]
- [r-bioc-bitseq_1.30.0+dfsg.orig.tar.xz]
- [r-bioc-bitseq_1.30.0+dfsg-1build1.debian.tar.xz]
Maintainer:
Original Maintainers:
- Debian R Packages Maintainers
- Andreas Tille
External Resources:
- Homepage [bioconductor.org]
Similar packages:
transcript expression inference and analysis for RNA-seq data
The BitSeq package is targeted for transcript expression analysis and differential expression analysis of RNA-seq data in two stage process. In the first stage it uses Bayesian inference methodology to infer expression of individual transcripts from individual RNA-seq experiments. The second stage of BitSeq embraces the differential expression analysis of transcript expression. Providing expression estimates from replicates of multiple conditions, Log-Normal model of the estimates is used for inferring the condition mean transcript expression and ranking the transcripts based on the likelihood of differential expression.
Other Packages Related to r-bioc-bitseq
|
|
|
-
- dep: libc6 (>= 2.29)
- GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
-
- dep: libcurl4 (>= 7.18.0)
- easy-to-use client-side URL transfer library (OpenSSL flavour)
-
- dep: libgcc-s1 (>= 3.0) [amd64]
- GCC support library
- dep: libgcc-s1 (>= 3.5) [armhf]
-
- dep: libgomp1 (>= 6)
- GCC OpenMP (GOMP) support library
-
- dep: libstdc++6 (>= 5.2)
- GNU Standard C++ Library v3
-
- dep: r-api-3.5
- virtual package provided by r-base-core
-
- dep: r-api-bioc-3.10
- virtual package provided by r-bioc-biocgenerics
-
- dep: r-base-core (>= 3.6.2.20200221-1build1)
- GNU R core of statistical computation and graphics system
-
- dep: r-bioc-iranges
- GNU R low-level containers for storing sets of integer ranges
-
- dep: r-bioc-rhtslib (>= 1.15.5)
- HTSlib high-throughput sequencing library as GNU R package
-
- dep: r-bioc-rsamtools (>= 1.99.3)
- GNU R binary alignment (BAM), variant call (BCF), or tabix file import
-
- dep: r-bioc-s4vectors
- BioConductor S4 implementation of vectors and lists
Download r-bioc-bitseq
Architecture | Package Size | Installed Size | Files |
---|---|---|---|
amd64 | 1,115.2 kB | 5986 kB | [list of files] |
armhf | 1,062.1 kB | 5604 kB | [list of files] |