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Package: libjellyfish-perl (2.3.0-4build1)

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libjellyfish-perl

Trisquel Resources:

Download Source Package jellyfish:

Maintainer:

Original Maintainers:

  • Debian Med Packaging Team (Mail Archive)
  • Shaun Jackman
  • Andreas Tille
  • Michael R. Crusoe

External Resources:

Similar packages:

count k-mers in DNA sequences (Perl bindings of jellyfish)

JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.

JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.

This package contains the Perl bindings of jellyfish.

Other Packages Related to libjellyfish-perl

  • depends
  • recommends
  • suggests
  • dep: libc6 (>= 2.14)
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
  • dep: libgcc-s1 (>= 3.0)
    GCC support library
  • dep: perl (>= 5.30.0-9)
    Larry Wall's Practical Extraction and Report Language
  • dep: perlapi-5.30.0
    virtual package provided by perl-base

Download libjellyfish-perl

Download for all available architectures
Architecture Package Size Installed Size Files
amd64 57.9 kB183 kB [list of files]