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Package: libvcflib1 (1.0.1+dfsg-3)

C++ library for parsing and manipulating VCF files

The Variant Call Format (VCF) is a flat-file, tab-delimited textual format intended to concisely describe reference-indexed variations between individuals. VCF provides a common interchange format for the description of variation in individuals and populations of samples, and has become the defacto standard reporting format for a wide array of genomic variant detectors.

vcflib provides methods to manipulate and interpret sequence variation as it can be described by VCF. It is both: 

 * an API for parsing and operating on records of genomic variation as it can
   be described by the VCF format,
 * and a collection of command-line utilities for executing complex
   manipulations on VCF files.

Other Packages Related to libvcflib1

  • depends
  • recommends
  • suggests
  • dep: libc6 (>= 2.15) [armhf]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
    dep: libc6 (>= 2.22) [amd64]
  • dep: libdisorder0 (>= 0.0.2)
    library for entropy measurement of byte streams
  • dep: libfastahack0 (>= 0.0+git20160702.bbc645f+dfsg-5~) [amd64]
    library for indexing and sequence extraction from FASTA files (lib)
    dep: libfastahack0 (>= 1.0.0+dfsg) [armhf]
  • dep: libgcc-s1 (>= 3.0) [amd64]
    GCC support library
    dep: libgcc-s1 (>= 3.5) [armhf]
  • dep: libsmithwaterman0 (>= 0.0+git20160702.2610e25)
    determine similar regions between two strings or genomic sequences (lib)
  • dep: libstdc++6 (>= 9)
    GNU Standard C++ Library v3
  • dep: libtabixpp0 (>= 1.0.0)
    C++ wrapper to tabix indexer

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Architecture Package Size Installed Size Files
amd64 147.1 kB421 kB [list of files]
armhf 124.6 kB268 kB [list of files]