Package: python-pyfaidx-examples (0.5.8-2)
Links for python-pyfaidx-examples
Trisquel Resources:
Download Source Package python-pyfaidx:
- [python-pyfaidx_0.5.8-2.dsc]
- [python-pyfaidx_0.5.8.orig.tar.gz]
- [python-pyfaidx_0.5.8-2.debian.tar.xz]
Maintainer:
Original Maintainers:
- Debian Med Packaging Team (Mail Archive)
- Andreas Tille
External Resources:
- Homepage [github.com]
Similar packages:
example data for efficient random access to fasta subsequences for Python
Samtools provides a function "faidx" (FAsta InDeX), which creates a small flat index file ".fai" allowing for fast random access to any subsequence in the indexed FASTA file, while loading a minimal amount of the file in to memory. This Python module implements pure Python classes for indexing, retrieval, and in-place modification of FASTA files using a samtools compatible index. The pyfaidx module is API compatible with the pygr seqdb module. A command-line script "faidx" is installed alongside the pyfaidx module, and facilitates complex manipulation of FASTA files without any programming knowledge.
This package provides example data to test the Python modules.
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- efficient random access to fasta subsequences for Python 3
Download python-pyfaidx-examples
Architecture | Package Size | Installed Size | Files |
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all | 44.1 kB | 287 kB | [list of files] |