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Package: bali-phy (3.4.1+dfsg-2build1)

Bayesian Inference of Alignment and Phylogeny

BAli-Phy estimates multiple sequence alignments and evolutionary trees from unaligned DNA, amino acid, or codon sequences. BAli-Phy uses MCMC to estimate evolutionary trees, positive selection, and branch lengths while averaging over alternative alignments. BAli-Phy can display alignment ambiguity graphically in an alignment uncertainty (AU) plot.

BAli-Phy can also estimate phylogenies from a fixed alignment (like MrBayes and BEAST) using substitution models like GTR+gamma. BAli-Phy automatically estimates relative rates for each gene.

Other Packages Related to bali-phy

  • depends
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  • sug: seaview
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Download bali-phy

Download for all available architectures
Architecture Package Size Installed Size Files
amd64 5,266.7 kB27260 kB [list of files]
armhf 4,139.4 kB16640 kB [list of files]