Skip to content
Sections
>> Trisquel >> Packages >> nabia >> science >> bedtools
etiona  ] [  nabia  ] [  aramo  ] [  aramo-updates  ]
[ Source: bedtools  ]

Package: bedtools (2.27.1+dfsg-4ubuntu1)

suite of utilities for comparing genomic features

The BEDTools utilities allow one to address common genomics tasks such as finding feature overlaps and computing coverage. The utilities are largely based on four widely-used file formats: BED, GFF/GTF, VCF, and SAM/BAM. Using BEDTools, one can develop sophisticated pipelines that answer complicated research questions by streaming several BEDTools together.

The groupBy utility is distributed in the filo package.

Other Packages Related to bedtools

  • depends
  • recommends
  • suggests
  • dep: libc6 (>= 2.29)
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
  • dep: libgcc-s1 (>= 3.0) [amd64]
    GCC support library
    dep: libgcc-s1 (>= 3.5) [armhf]
  • dep: libstdc++6 (>= 5.2)
    GNU Standard C++ Library v3
  • dep: zlib1g (>= 1:1.2.3.3)
    compression library - runtime

Download bedtools

Download for all available architectures
Architecture Package Size Installed Size Files
amd64 566.1 kB2007 kB [list of files]
armhf 486.4 kB1206 kB [list of files]