[ Source: gubbins ]
Package: gubbins (2.3.5-1)
Links for gubbins
Trisquel Resources:
Download Source Package gubbins:
Maintainer:
Original Maintainers:
- Debian Med Packaging Team (Mail Archive)
- Andreas Tille
- Aidan Delaney
External Resources:
- Homepage [sanger-pathogens.github.io]
Similar packages:
phylogenetic analysis of genome sequences
Gubbins supports rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences.
Gubbins (Genealogies Unbiased By recomBinations In Nucleotide Sequences) is an algorithm that iteratively identifies loci containing elevated densities of base substitutions while concurrently constructing a phylogeny based on the putative point mutations outside of these regions. Simulations demonstrate the algorithm generates highly accurate reconstructions under realistic models of short-term bacterial evolution, and can be run in only a few hours on alignments of hundreds of bacterial genome sequences.
Other Packages Related to gubbins
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- dep: fasttree
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- dep: libc6 (>= 2.29)
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also a virtual package provided by libc6-udeb
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- dep: python3
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- dep: python3-biopython
- Python3 library for bioinformatics
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- dep: python3-dendropy
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- dep: python3-nose
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- dep: python3-reportlab
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- dep: raxml
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- dep: zlib1g (>= 1:1.1.4)
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Download gubbins
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| amd64 | 44.3 kB | 181 kB | [list of files] |
| armhf | 39.0 kB | 151 kB | [list of files] |