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[ aramo ]
[ Source: libbio-db-hts-perl ]
Package: libbio-db-hts-perl (3.01-3)
Links for libbio-db-hts-perl
Trisquel Resources:
Download Source Package libbio-db-hts-perl:
- [libbio-db-hts-perl_3.01-3.dsc]
- [libbio-db-hts-perl_3.01.orig.tar.gz]
- [libbio-db-hts-perl_3.01-3.debian.tar.xz]
Maintainer:
Original Maintainers:
- Debian Med Packaging Team (Mail Archive)
- Andreas Tille
External Resources:
- Homepage [metacpan.org]
Similar packages:
Perl interface to the HTS library
HTSlib is an implementation of a unified C library for accessing common file formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call Format), used for high-throughput sequencing data, and is the core library used by samtools and bcftools. HTSlib only depends on zlib. It is known to be compatible with gcc, g++ and clang.
HTSlib implements a generalized BAM (binary SAM) index, with file extension 'csi' (coordinate-sorted index). The HTSlib file reader first looks for the new index and then for the old if the new index is absent.
This package provides a Perl interface to the HTS library.
Other Packages Related to libbio-db-hts-perl
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- dep: libbio-perl-perl
- BioPerl core perl modules
-
- dep: libc6 (>= 2.14) [amd64]
- GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
- dep: libc6 (>= 2.4) [armhf]
-
- dep: libhts3 (>= 1.10)
- C library for high-throughput sequencing data formats
-
- dep: perl (>= 5.30.0-9)
- Larry Wall's Practical Extraction and Report Language
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- dep: perlapi-5.30.0
- virtual package provided by perl-base
-
- dep: zlib1g (>= 1:1.2.3.3)
- compression library - runtime
Download libbio-db-hts-perl
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| amd64 | 153.5 kB | 450 kB | [list of files] |
| armhf | 147.3 kB | 392 kB | [list of files] |