Skip to content
Sections
>> Trisquel >> Packages >> nabia >> science >> maqview
etiona  ] [  nabia  ] [  aramo  ]
[ Source: maqview  ]

Package: maqview (0.2.5-9build1)

Links for maqview

maqview

Trisquel Resources:

Download Source Package maqview:

Maintainer:

Original Maintainers:

  • Debian-Med Packaging Team (Mail Archive)
  • Andreas Tille
  • Charles Plessy

External Resources:

Similar packages:

graphical read alignment viewer for short gene sequences

Maqview is graphical read alignment viewer. It is specifically designed for the Maq alignment file and allows you to see the mismatches, base qualities and mapping qualities. Maqview is nothing fancy as Consed or GAP, but just a simple viewer for you to see what happens in a particular region.

In comparison to tgap-maq, the text-based read alignment viewer written by James Bonfield, Maqview is faster and takes up much less memory and disk space in indexing. This is possibly because tgap aims to be a general-purpose viewer but Maqview fully makes use of the fact that a Maq alignment file has already been sorted. Maqview is also efficient in viewing and provides a command-line tool to quickly retrieve any region in an Maq alignment file.

Other Packages Related to maqview

  • depends
  • recommends
  • suggests
  • dep: freeglut3
    OpenGL Utility Toolkit
  • dep: libc6 (>= 2.15)
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
  • dep: libgcc-s1 (>= 3.5) [armhf]
    GCC support library
  • dep: libgl1
    Vendor neutral GL dispatch library -- legacy GL support
  • dep: libglu1-mesa
    Mesa OpenGL utility library (GLU)
    or libglu1
    virtual package provided by libglu1-mesa
  • dep: libstdc++6 (>= 5)
    GNU Standard C++ Library v3

Download maqview

Download for all available architectures
Architecture Package Size Installed Size Files
amd64 107.0 kB631 kB [list of files]
armhf 92.2 kB394 kB [list of files]