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Package: optimir (1.0-2)

Integrating genetic variations in miRNA alignment

OptimiR is a miRSeq data alignment workflow. It integrates genetic information to assess the impact of variants on miRNA expression.

OptimiR: A bioinformatics pipeline designed to detect and quantify miRNAs, isomiRs and polymiRs from miRSeq data, & study the impact of genetic variations on polymiRs' expression.

Other Packages Related to optimir

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    ultrafast memory-efficient short read aligner
  • dep: cutadapt
    Clean biological sequences from high-throughput sequencing reads
  • dep: python3
    interactive high-level object-oriented language (default python3 version)
  • dep: python3-biopython
    Python3 library for bioinformatics
  • dep: python3-pysam
    interface for the SAM/BAM sequence alignment and mapping format (Python 3)
  • dep: samtools
    processing sequence alignments in SAM, BAM and CRAM formats

Download optimir

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Architecture Package Size Installed Size Files
all 1,003.8 kB7404 kB [list of files]