[ nabia ]
[ aramo ]
[ Source: ragout ]
Package: ragout (2.2+ds-1build2)
Links for ragout
Trisquel Resources:
Download Source Package ragout:
Maintainer:
Original Maintainers:
- Debian Med Packaging Team (Mail Archive)
- Andreas Tille
External Resources:
- Homepage [github.com]
Similar packages:
Reference-Assisted Genome Ordering UTility
Ragout (Reference-Assisted Genome Ordering UTility) is a tool for chromosome-level scaffolding using multiple references. Given initial assembly fragments (contigs/scaffolds) and one or multiple related references (complete or draft), it produces a chromosome-scale assembly (as a set of scaffolds).
The approach is based on the analysis of genome rearrangements (like inversions or chromosomal translocations) between the input genomes and reconstructing the most parsimonious structure of the target genome.
Ragout now supports both small and large genomes (of mammalian scale and complexity). The assembly of highly polymorphic genomes is currently limited.
Other Packages Related to ragout
|
|
|
-
- dep: libc6 (>= 2.14) [amd64]
- GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
- dep: libc6 (>= 2.4) [armhf]
-
- dep: libgcc-s1 (>= 3.0) [amd64]
- GCC support library
- dep: libgcc-s1 (>= 3.5) [armhf]
-
- dep: libstdc++6 (>= 9)
- GNU Standard C++ Library v3
-
- dep: python3
- interactive high-level object-oriented language (default python3 version)
-
- dep: python3-networkx (>= 2.2)
- tool to create, manipulate and study complex networks (Python3)
-
- rec: sibelia
- Package not available
Download ragout
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| amd64 | 105.7 kB | 428 kB | [list of files] |
| armhf | 97.6 kB | 346 kB | [list of files] |