Skip to content
Sections
>> Trisquel >> Packages >> nabia >> science >> rampler
nabia  ] [  aramo  ]
[ Source: rampler  ]

Package: rampler (1.1.1-1build1)

module for sampling genomic sequences

Standalone module for sampling genomic sequences. It supports two modes, random subsampling of sequencer data to a desired depth (given the reference length) and file splitting to desired size in bytes.

Rampler takes as first input argument a file in FASTA/FASTQ format which can be compressed with gzip. The rest of input parameters depend on the mode of operation. The output is stored into a file(s) which is in the same format as the input file but uncompressed.

Other Packages Related to rampler

  • depends
  • recommends
  • suggests
  • dep: libc6 (>= 2.14) [amd64]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
    dep: libc6 (>= 2.4) [armhf]
  • dep: libgcc-s1 (>= 3.0) [amd64]
    GCC support library
    dep: libgcc-s1 (>= 3.5) [armhf]
  • dep: libstdc++6 (>= 5.2)
    GNU Standard C++ Library v3
  • dep: zlib1g (>= 1:1.2.11)
    compression library - runtime

Download rampler

Download for all available architectures
Architecture Package Size Installed Size Files
amd64 19.6 kB60 kB [list of files]
armhf 15.8 kB43 kB [list of files]