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[ aramo ]
[ Source: skewer ]
Package: skewer (0.2.2-1build1)
Links for skewer
Trisquel Resources:
Download Source Package skewer:
Maintainer:
Original Maintainers:
- Debian Med Packaging Team (Mail Archive)
- Steffen Moeller
External Resources:
- Homepage [github.com]
Similar packages:
post-processing of high-throughput DNA sequence reads
skewer implements the bit-masked k-difference matching algorithm dedicated to the task of adapter trimming and it is specially designed for processing next-generation sequencing (NGS) paired-end sequences.
Features
* Detection and removal of adapter sequences * Insertion and deletion allowed in pattern matching * Targeted at Single End, Paired End (PE), and Long Mate Pair (LMP) reads * Demultiplexing of barcoded sequencing runs * Multi-threading support * Trimming based on phred quality scores * IUPAC characters for barcodes and adapters * Compressed input and output support
Other Packages Related to skewer
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- dep: libc6 (>= 2.17)
- GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
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- dep: libgcc-s1 (>= 3.0) [amd64]
- GCC support library
- dep: libgcc-s1 (>= 3.5) [armhf]
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- dep: libstdc++6 (>= 5.2)
- GNU Standard C++ Library v3
Download skewer
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| amd64 | 68.5 kB | 207 kB | [list of files] |
| armhf | 60.3 kB | 130 kB | [list of files] |