[ Bron: gasic ]
Pakket: gasic (0.0.r19-7)
Verwijzigingen voor gasic
Trisquel bronnen:
Het bronpakket gasic downloaden:
Beheerder:
Original Maintainers:
- Debian Med Packaging Team (Mailarchief)
- Andreas Tille
- Navid Fehrenbacher
- Roland Fehrenbacher
Externe bronnen:
- Homepage [sourceforge.net]
Vergelijkbare pakketten:
genome abundance similarity correction
One goal of sequencing based metagenomic analysis is the quantitative taxonomic assessment of microbial community compositions. However, the majority of approaches either quantify at low resolution (e.g. at phylum level) or have severe problems discerning highly similar species. Yet, accurate quantification on species level is desirable in applications such as metagenomic diagnostics or community comparison. GASiC is a method to correct read alignment results for the ambiguities imposed by similarities of genomes. It has superior performance over existing methods.
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- Python based plotting system in a style similar to Matlab (Python 3)
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- interface for the SAM/BAM sequence alignment and mapping format (Python 3)
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