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Pakket: qiime (2021.8.0-2)

Verwijzigingen voor qiime

qiime

Trisquel bronnen:

Het bronpakket qiime downloaden:

Beheerder:

Original Maintainers:

  • Debian Med Packaging Team (Mailarchief)
  • Steffen Moeller
  • Liubov Chuprikova
  • Andreas Tille
  • Étienne Mollier

Externe bronnen:

Vergelijkbare pakketten:

Quantitative Insights Into Microbial Ecology

QIIME 2 is a powerful, extensible, and decentralized microbiome analysis package with a focus on data and analysis transparency. QIIME 2 enables researchers to start an analysis with raw DNA sequence data and finish with publication-quality figures and statistical results. Key features:

 * Integrated and automatic tracking of data provenance
 * Semantic type system
 * Plugin system for extending microbiome analysis functionality
 * Support for multiple types of user interfaces (e.g. API, command line,
graphical)

QIIME 2 is a complete redesign and rewrite of the QIIME 1 microbiome analysis pipeline. QIIME 2 will address many of the limitations of QIIME 1, while retaining the features that makes QIIME 1 a powerful and widely-used analysis pipeline.

QIIME 2 currently supports an initial end-to-end microbiome analysis pipeline. New functionality will regularly become available through QIIME 2 plugins. You can view a list of plugins that are currently available on the QIIME 2 plugin availability page. The future plugins page lists plugins that are being developed.

Andere aan qiime gerelateerde pakketten

  • depends
  • recommends
  • suggests
  • rec: q2-cutadapt
    QIIME 2 plugin to work with adapters in sequence data
  • rec: q2-demux
    QIIME 2 plugin for demultiplexing of sequence reads
  • rec: q2-feature-classifier
    QIIME 2 plugin supporting taxonomic classification
  • rec: q2-feature-table
    QIIME 2 plugin supporting operations on feature tables
  • rec: q2-metadata
    QIIME 2 plugin for working with and visualizing Metadata
  • rec: q2-quality-filter
    QIIME2 plugin for PHRED-based filtering and trimming
  • rec: q2-types
    QIIME 2 plugin defining types for microbiome analysis
  • rec: q2cli
    Pakket niet beschikbaar
  • rec: q2templates
    Design template package for QIIME 2 Plugins

qiime downloaden

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