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Pakket: unicycler (0.4.8+dfsg-2build1)

Verwijzigingen voor unicycler

unicycler

Trisquel bronnen:

Het bronpakket unicycler downloaden:

Beheerder:

Original Maintainers:

  • Debian Med Packaging Team (Mailarchief)
  • Andreas Tille
  • Liubov Chuprikova

Externe bronnen:

Vergelijkbare pakketten:

hybrid assembly pipeline for bacterial genomes

Unicycler is an assembly pipeline for bacterial genomes. It can assemble Illumina-only read sets where it functions as a SPAdes-optimiser. It can also assembly long-read-only sets (PacBio or Nanopore) where it runs a miniasm+Racon pipeline. For the best possible assemblies, give it both Illumina reads and long reads, and it will conduct a hybrid assembly.

Andere aan unicycler gerelateerde pakketten

  • depends
  • recommends
  • suggests
  • dep: bcftools
    genomic variant calling and manipulation of VCF/BCF files
  • dep: bowtie2
    ultrafast memory-efficient short read aligner
  • dep: default-jre
    Standard Java or Java compatible Runtime
  • dep: libc6 (>= 2.29)
    GNU C Library: Shared libraries
    Ook een virtueel pakket geboden door: libc6-udeb
  • dep: libgcc-s1 (>= 3.0)
    GCC support library
  • dep: libstdc++6 (>= 6)
    GNU Standard C++ Library v3
  • dep: miniasm
    ultrafast de novo assembler for long noisy DNA sequencing reads
  • dep: ncbi-blast+
    next generation suite of BLAST sequence search tools
  • dep: pilon
    automated genome assembly improvement and variant detection tool
  • dep: python3
    interactive high-level object-oriented language (default python3 version)
    dep: python3 (>= 3~)
  • dep: python3-setuptools
    Python3 Distutils Enhancements
  • dep: racon
    consensus module for raw de novo DNA assembly of long uncorrected reads
  • dep: samtools
    processing sequence alignments in SAM, BAM and CRAM formats
  • dep: spades (>= 3.13.1)
    genome assembler for single-cell and isolates data sets
  • dep: zlib1g (>= 1:1.1.4)
    compression library - runtime
  • rec: unicycler-data
    hybrid assembly pipeline for bacterial genomes (data package)

unicycler downloaden

Pakket downloaden voor alle beschikbare platforms
Platform Pakketgrootte Geïnstalleerde grootte Bestanden
amd64 855,4 kB3504 kB [overzicht]